RetrogeneDB ID:

retro_tbel_2213

Retrocopy
location
Organism:Treeshrew (Tupaia belangeri)
Coordinates:scaffold_105123:49..1293(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:WBP11
Ensembl ID:ENSTBEG00000003394
Aliases:None
Description:WW domain binding protein 11 [Source:HGNC Symbol;Acc:16461]


Retrocopy-Parental alignment summary:






>retro_tbel_2213
GTGGGAACGAAATCAACATCATCACCAAGAGTGGGAAGTTTATGAACCCCCACCAGATCAAGCTCAAAAGGAAACTTGAA
AAAGAATTATAAAAGAACAAAAAACACATGATGATGCAATCTGCAAGATTTGAAGATGAAGGATCCTAAACAGATTACCT
GGCACATGGAAAAATTGGATGAAATGGCATTTAACCCAGTTCAACAACCACAACTAAATGAGAAAGTACTGAAAGACAAG
TGTTAAGAAGCTGCGTGAAACTTTTGAACATATTCTACGACTCTATGAAAAAGAGAATCCAGATATTTACAAGGAATTGA
GAAAGCTAGAAGTAAAATATGAACAGAAGAGAGCTCAACTTAGCCAGTATTTGACGCTGTCAAGAACGCAAAGCATGTGG
AAGTGGAGAGTATTCCTTTGCCAGATATGCCACATGCTCCTTCCAACATCTTGATCCAGGACATTCTACTTCCTGGGACC
CAGCCACCCTCTATCCTTAAGAAAACTTCAGCCTATAGATTTCCAACTTGGACAGTTTCAATACTTCGTCTTCTTAGACA
AGGTGTTCCACGTTTGTCTCCTGGCAGAAAACCTCCGGGCCCTCCCCCTGGTCCACCTCCTGCTCAGGTTTTACAGATGT
AGTGTTGTAAAATGGGCTTTGCCCTAGATCTTCCCCCTCACAGACCAGATGAAGTCATGTTACATAGTCCTGAACTTGCT
CAGCCAGGTCACCATGATGGCGTTTCCAGCACCAGTGAAGATGATGGCTATCCTGAGGACATGGATCAAGATAAACATGA
TGACAGTACTGATGACAGTGACACTGACAGGTCAGATGGAGAAAGTGAGGGGGATGAATTTGTGCATCAGGATGATAGCG
AGAGAGATAATAATGAAGAAAAAAGTCAGGTCTGAGTGTACGATTTGCAGATATGCCTGGAAAATCAAGAAAGAAAAAGA
AGAATGTGAAGGAGCTGATTTCTCTTCTAGTCATAATGCTTCAAATAGTAGGTCAGGAAATAAATCCCAGAGAAGAGACG
AGAAGTAGAGAAATTTTTGGATGGTGGTGGTGATGATGATGATGATGATGATTCTGATGATTCTAAAGCAGAAAAGCAGT
CGCGAAAACAGCATAAGAGAAATCTTGCTCTGATGGCCCGTCCACTGCTTCTTCACAGCAGCAGGCTCCTCCCCAGCCTG
TTCCTCCTTCTTCAGATACAGCATCTCCCATGCCAGGACCACCT

ORF - retro_tbel_2213 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.52 %
Parental protein coverage: 66.24 %
Number of stop codons detected: 2
Number of frameshifts detected 7


Retrocopy - Parental Gene Alignment:

ParentalMGRRSTSS-TKSGKFMNPTDQARKEARKRELKKNKKQRMMVRAAV-LKMKDPKQIIRDMEKLDEMEFNPV
.G..STSS.TKSGKFMNP.....K.....EL.KNKK..MM...A..LKMKDPKQI...MEKLDEM.FNPV
RetrocopyVGTKSTSS<TKSGKFMNPHQIKLKRKLEKEL*KNKKH-MMMQSAR>LKMKDPKQITWHMEKLDEMAFNPV
ParentalQQPQLNEKVLKDKR-KKLRETFERILRLYEKENPDIYKELRKLEVEYEQKRAQLSQY-FDAVKNAQHVEV
QQPQLNEKVLKDK..KKLRETFE.ILRLYEKENPDIYKELRKLEV.YEQKRAQLSQY.FDAVKNA.HVEV
RetrocopyQQPQLNEKVLKDKC>KKLRETFEHILRLYEKENPDIYKELRKLEVKYEQKRAQLSQY<FDAVKNAKHVEV
ParentalESIPLPDMPHAPSNILIQDIPLPGAQPPSILKKTSAYGPPTRTVSILPLLGHGVPRLPPGRKPPGPPPGP
ESIPLPDMPHAPSNILIQDI.LPG.QPPSILKKTSAY..PT.TVSIL.LL..GVPRL.PGRKPPGPPPGP
RetrocopyESIPLPDMPHAPSNILIQDILLPGTQPPSILKKTSAYRFPTWTVSILRLLRQGVPRLSPGRKPPGPPPGP
ParentalPPPQVLQMYGRKVGFALDLPPRRRDEDMLYSPELAQRGHDDDISSTSEDDGYPEDMDQDKHDDSTDDSDT
PP.QVLQM...K.GFALDLPP.R.DE.ML.SPELAQ.GH.D..SSTSEDDGYPEDMDQDKHDDSTDDSDT
RetrocopyPPAQVLQM*CCKMGFALDLPPHRPDEVMLHSPELAQPGHHDGVSSTSEDDGYPEDMDQDKHDDSTDDSDT
ParentalDRSDGESEGDEFVHRDDNERDNNEE-KKSGLSVRFADMPGKSRKKKKNMKELTPLQAMMLRMAGQEI-PE
DRSDGESEGDEFVH.DD.ERDNNEE.KKSGLSVRFADMPGKSRKKKKN.KEL..L...ML...GQEI.P.
RetrocopyDRSDGESEGDEFVHQDDSERDNNEE<KKSGLSVRFADMPGKSRKKKKNVKELISLLVIMLQIVGQEINPR
ParentalE-GREVEEFSDDDDDDDSDDSEAEKQSQKQHKEESHSD-GTSTASSQQQAPPQSVPPSQIQAPPMPGPPP
E..REVE.F...................KQ...........S...S......Q..P...........P.P
RetrocopyE>RREVEKFLXXXXXXXXXXXXXXXKAEKQSRKQHKRN<SCSDGPSTASSQQQAPPQPVPPSSDTASPMP
ParentalLGPP
.GPP
Retrocopy-GPP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tupaia belangeri was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_tbel_2213 retrocopy.

TSS - click to see more details

Tupaia belangeri was not studied using FANTOM5 data.

Lab - click to see more details

retro_tbel_2213 was not experimentally validated.

Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 22 parental genes, and 34 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000147591 retrocopy
retro_btau_20,
Canis familiaris ENSCAFG000000129262 retrocopies
retro_cfam_1369, retro_cfam_1911,
Callithrix jacchus ENSCJAG000000216111 retrocopy
retro_cjac_1737,
Homo sapiens ENSG000000844632 retrocopies
retro_hsap_1878, retro_hsap_4719,
Gorilla gorilla ENSGGOG000000044483 retrocopies
retro_ggor_1375, retro_ggor_1711, retro_ggor_2932,
Macropus eugenii ENSMEUG000000139711 retrocopy
retro_meug_1952,
Myotis lucifugus ENSMLUG000000152161 retrocopy
retro_mluc_1074,
Macaca mulatta ENSMMUG000000192991 retrocopy
retro_mmul_1329,
Monodelphis domestica ENSMODG000000179491 retrocopy
retro_mdom_143,
Mustela putorius furoENSMPUG000000116191 retrocopy
retro_mputfur_280,
Mus musculus ENSMUSG000000302161 retrocopy
retro_mmus_2740,
Nomascus leucogenys ENSNLEG000000039261 retrocopy
retro_nleu_2651,
Oryctolagus cuniculus ENSOCUG000000171771 retrocopy
retro_ocun_974,
Otolemur garnettii ENSOGAG000000105181 retrocopy
retro_ogar_207,
Ochotona princeps ENSOPRG000000150083 retrocopies
retro_opri_107, retro_opri_1159, retro_opri_678,
Pongo abelii ENSPPYG000000043233 retrocopies
retro_pabe_1558, retro_pabe_2099, retro_pabe_3663,
Pan troglodytes ENSPTRG000000047243 retrocopies
retro_ptro_1260, retro_ptro_1637, retro_ptro_3136,
Rattus norvegicus ENSRNOG000000055053 retrocopies
retro_rnor_1287, retro_rnor_2726, retro_rnor_741,
Rattus norvegicus ENSRNOG000000495931 retrocopy
retro_rnor_740,
Sorex araneus ENSSARG000000070851 retrocopy
retro_sara_753,
Sarcophilus harrisii ENSSHAG000000166491 retrocopy
retro_shar_81,
Tupaia belangeri ENSTBEG00000003394 1 retrocopy
retro_tbel_2213 ,


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