RetrogeneDB ID: | retro_pabe_1800 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 20:5998550..5998886(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS11 | ||
Ensembl ID: | ENSPPYG00000025860 | ||
Aliases: | None | ||
Description: | ribosomal protein S11 [Source:HGNC Symbol;Acc:10384] |
Percent Identity: | 67.26 % |
Parental protein coverage: | 95.76 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRG |
.ADI..E..YQKQPTIF......LL.ETGK.KLPR.YKNIGLGFKTPK...EGT..DKK.PFTGN.SI.. | |
Retrocopy | IADIKME*GYQKQPTIFXXXXXXLLRETGK-KLPR*YKNIGLGFKTPKKDNEGT*TDKKFPFTGNISI*E |
Parental | RILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHL |
RIL.G.V.KMK.QRTIVI..DYLHY..KYN..EK.H.NM.V.L | |
Retrocopy | RILFGMVNKMKSQRTIVICPDYLHYMSKYNCVEKCHENMTVYL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 195 .29 RPM |
SRP007412_cerebellum | 0 .00 RPM | 131 .21 RPM |
SRP007412_heart | 0 .00 RPM | 163 .28 RPM |
SRP007412_kidney | 0 .00 RPM | 398 .29 RPM |
SRP007412_liver | 0 .00 RPM | 259 .81 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2449 |
Gorilla gorilla | retro_ggor_1525 |
Macaca mulatta | retro_mmul_634 |