Parental gene:

RPS11, ENSBTAG00000013924

Aliases:None
Description:40S ribosomal protein S11 [Source:UniProtKB/Swiss-Prot;Acc:Q3T0V4]
Organism:Cow (Bos taurus)
Coordinates:18:56404236..56406668(+)


>ENSBTAG00000013924
ATGGCGGACATTCAGACAGAACGTGCGTACCAAAAGCAACCGACCATCTTTCAAAATAAAAAGAGGGTCCTGCTTGGAGA
AACTGGCAAAGAAAAGCTCCCTCGATACTACAAGAACATTGGTCTGGGCTTCAAGACTCCAAAGGAGGCCATCGAGGGCA
CCTACATTGACAAGAAATGCCCTTTTACGGGTAATGTCTCCATTCGAGGGCGGATCCTGTCTGGCGTGGTGACCAAAATG
AAGATGCAGAGGACCATCGTCATCCGCCGAGACTACCTTCACTACATCCGAAAGTACAACCGCTTTGAGAAGCGCCACAA
GAACATGTCCGTGCACCTTTCTCCCTGCTTCAGGGACGTCCAGATCGGCGACATCGTCACGGTGGGCGAGTGCCGGCCCC
TGAGCAAGACTGTGCGCTTCAATGTCCTCAAGGTCACCAAGGCTGCCGGCACCAAGAAGCAGTTCCAGAAGTTCTGA

Library Parental gene expression (RPM)
ERP005899_liver 279 .95 RPM
ERP005899_muscle 1984 .45 RPM
SRP017611_brain 115 .71 RPM
SRP017611_kidney 383 .31 RPM
SRP017611_liver 282 .25 RPM
SRP030211_testis 196 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014020 ortholog_one2one 13 retrogenes
retro_amel_1038, retro_amel_1071, retro_amel_1398, retro_amel_1406, retro_amel_1475, retro_amel_246, retro_amel_262, retro_amel_317, retro_amel_64, retro_amel_757, retro_amel_759, retro_amel_764, retro_amel_859,
Canis familiaris ENSCAFG00000003631 possible_ortholog 9 retrogenes
retro_cfam_126, retro_cfam_1333, retro_cfam_1572, retro_cfam_1656, retro_cfam_1669, retro_cfam_1900, retro_cfam_1955, retro_cfam_2121, retro_cfam_248,
Callithrix jacchus ENSCJAG00000000069 ortholog_one2one 1 retrogene
retro_cjac_340,
Cavia porcellus ENSCPOG00000015145 ortholog_one2one 1 retrogene
retro_cpor_534,
Danio rerio ENSDARG00000053058 ortholog_many2many 1 retrogene
retro_drer_15,
Dasypus novemcinctus ENSDNOG00000016107 possible_ortholog 9 retrogenes
retro_dnov_1055, retro_dnov_1102, retro_dnov_1629, retro_dnov_1729, retro_dnov_188, retro_dnov_2520, retro_dnov_586, retro_dnov_68, retro_dnov_754,
Equus caballus ENSECAG00000000370 ortholog_one2many 1 retrogene
retro_ecab_868,
Erinaceus europaeus ENSEEUG00000003392 ortholog_one2one 1 retrogene
retro_eeur_75,
Homo sapiens ENSG00000142534 ortholog_one2one 6 retrogenes
retro_hsap_1017, retro_hsap_1068, retro_hsap_230, retro_hsap_2449, retro_hsap_4242, retro_hsap_4674,
Gorilla gorilla ENSGGOG00000002936 possible_ortholog 6 retrogenes
retro_ggor_1525, retro_ggor_2843, retro_ggor_2900, retro_ggor_292, retro_ggor_805, retro_ggor_842,
Loxodonta africana ENSLAFG00000016217 ortholog_one2one 2 retrogenes
retro_lafr_622, retro_lafr_658,
Macropus eugenii ENSMEUG00000008649 possible_ortholog 2 retrogenes
retro_meug_1176, retro_meug_1640,
Myotis lucifugus ENSMLUG00000030475 possible_ortholog 1 retrogene
retro_mluc_539,
Macaca mulatta ENSMMUG00000007549 possible_ortholog 6 retrogenes
retro_mmul_1147, retro_mmul_1856, retro_mmul_2464, retro_mmul_413, retro_mmul_634, retro_mmul_813,
Monodelphis domestica ENSMODG00000013434 ortholog_one2many 7 retrogenes
retro_mdom_1185, retro_mdom_1284, retro_mdom_1421, retro_mdom_1950, retro_mdom_636, retro_mdom_922, retro_mdom_978,
Mustela putorius furo ENSMPUG00000002599 ortholog_one2one 10 retrogenes
retro_mputfur_1402, retro_mputfur_1507, retro_mputfur_200, retro_mputfur_306, retro_mputfur_345, retro_mputfur_485, retro_mputfur_491, retro_mputfur_626, retro_mputfur_781, retro_mputfur_897,
Otolemur garnettii ENSOGAG00000004627 possible_ortholog 7 retrogenes
retro_ogar_1290, retro_ogar_1813, retro_ogar_1910, retro_ogar_2037, retro_ogar_2573, retro_ogar_2640, retro_ogar_840,
Procavia capensis ENSPCAG00000004146 ortholog_one2one 2 retrogenes
retro_pcap_333, retro_pcap_54,
Pongo abelii ENSPPYG00000025860 ortholog_one2one 5 retrogenes
retro_pabe_1800, retro_pabe_3396, retro_pabe_3631, retro_pabe_855, retro_pabe_889,
Pelodiscus sinensis ENSPSIG00000011089 possible_ortholog 1 retrogene
retro_psin_35,
Pan troglodytes ENSPTRG00000011299 possible_ortholog 1 retrogene
retro_ptro_88,
Rattus norvegicus ENSRNOG00000020595 ortholog_one2one 18 retrogenes
retro_rnor_1132, retro_rnor_1159, retro_rnor_1261, retro_rnor_1299, retro_rnor_1363, retro_rnor_1414, retro_rnor_1435, retro_rnor_1451, retro_rnor_1635, retro_rnor_1790, retro_rnor_2000, retro_rnor_2647, retro_rnor_385, retro_rnor_394, retro_rnor_538, retro_rnor_737, retro_rnor_835, retro_rnor_989,
Sorex araneus ENSSARG00000003236 ortholog_one2one 2 retrogenes
retro_sara_11, retro_sara_469,
Sarcophilus harrisii ENSSHAG00000004991 possible_ortholog 1 retrogene
retro_shar_649,
Sus scrofa ENSSSCG00000003165 possible_ortholog 2 retrogenes
retro_sscr_432, retro_sscr_887,
Ictidomys tridecemlineatus ENSSTOG00000023443 possible_ortholog 2 retrogenes
retro_itri_1033, retro_itri_805,
Tupaia belangeri ENSTBEG00000016677 possible_ortholog 16 retrogenes
retro_tbel_125, retro_tbel_1361, retro_tbel_1753, retro_tbel_2071, retro_tbel_2207, retro_tbel_2808, retro_tbel_2947, retro_tbel_319, retro_tbel_3401, retro_tbel_3571, retro_tbel_3600, retro_tbel_3742, retro_tbel_449, retro_tbel_604, retro_tbel_801, retro_tbel_836,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_888 73.58 63.92
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2. retro_btau_1282 69.39 59.49
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3. retro_btau_1369 74.44 56.96
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4. retro_btau_1499 59.38 100.00
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5. retro_btau_1529 78.63 81.65
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Download FASTA sequences of all ENSBTAG00000013924 retrocopies