Parental gene:

RPS11, ENSEEUG00000003392

Aliases:None
Description:ribosomal protein S11 [Source:HGNC Symbol;Acc:10384]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:scaffold_108650:487..1176(+)


>ENSEEUG00000003392
ACCGAGCGTGCCTACCAGAAGCAGCCGACCATCTTTCAAAATAAGAAGAGGGTCCTGCTCGGGGAGACCGGCAAGGAGAA
GCTGCCCAGGTACTACAAGAACATCGGCCTCGGCTTCAAGACGCCCAAGGAGGCCATCGAGGGCACCTACATCGACAAGA
AATGCCCCTTCACCGGTAACGTCTCCATTCGGGGCCGGATCCTGTCTGGCGTGGTGACCAAGATGAAGATGCAGAGGACC
ATCGTCATCCGCCGCGACTATCTGCACTACATCAAGTACAACCGCTTTGAGAAGCGTCACAAGAACATGTCCGTCCACCT
GCCCTGCTTC

Library Parental gene expression (RPM)
SRP017611_liver 91 .64 RPM
SRP017611_kidney 160 .16 RPM
SRP017611_brain 46 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014020 ortholog_one2one 13 retrogenes
retro_amel_1038, retro_amel_1071, retro_amel_1398, retro_amel_1406, retro_amel_1475, retro_amel_246, retro_amel_262, retro_amel_317, retro_amel_64, retro_amel_757, retro_amel_759, retro_amel_764, retro_amel_859,
Bos taurus ENSBTAG00000013924 ortholog_one2one 5 retrogenes
retro_btau_1282, retro_btau_1369, retro_btau_1499, retro_btau_1529, retro_btau_888,
Canis familiaris ENSCAFG00000003631 possible_ortholog 9 retrogenes
retro_cfam_126, retro_cfam_1333, retro_cfam_1572, retro_cfam_1656, retro_cfam_1669, retro_cfam_1900, retro_cfam_1955, retro_cfam_2121, retro_cfam_248,
Callithrix jacchus ENSCJAG00000000069 ortholog_one2one 1 retrogene
retro_cjac_340,
Cavia porcellus ENSCPOG00000015145 ortholog_one2one 1 retrogene
retro_cpor_534,
Danio rerio ENSDARG00000053058 ortholog_one2many 1 retrogene
retro_drer_15,
Equus caballus ENSECAG00000000370 ortholog_one2one 1 retrogene
retro_ecab_868,
Homo sapiens ENSG00000142534 ortholog_one2one 6 retrogenes
retro_hsap_1017, retro_hsap_1068, retro_hsap_230, retro_hsap_2449, retro_hsap_4242, retro_hsap_4674,
Loxodonta africana ENSLAFG00000016217 ortholog_one2one 2 retrogenes
retro_lafr_622, retro_lafr_658,
Monodelphis domestica ENSMODG00000013434 ortholog_one2one 7 retrogenes
retro_mdom_1185, retro_mdom_1284, retro_mdom_1421, retro_mdom_1950, retro_mdom_636, retro_mdom_922, retro_mdom_978,
Mustela putorius furo ENSMPUG00000002599 ortholog_one2one 10 retrogenes
retro_mputfur_1402, retro_mputfur_1507, retro_mputfur_200, retro_mputfur_306, retro_mputfur_345, retro_mputfur_485, retro_mputfur_491, retro_mputfur_626, retro_mputfur_781, retro_mputfur_897,
Otolemur garnettii ENSOGAG00000004627 possible_ortholog 7 retrogenes
retro_ogar_1290, retro_ogar_1813, retro_ogar_1910, retro_ogar_2037, retro_ogar_2573, retro_ogar_2640, retro_ogar_840,
Procavia capensis ENSPCAG00000004146 ortholog_one2one 2 retrogenes
retro_pcap_333, retro_pcap_54,
Pongo abelii ENSPPYG00000025860 ortholog_one2one 5 retrogenes
retro_pabe_1800, retro_pabe_3396, retro_pabe_3631, retro_pabe_855, retro_pabe_889,
Pan troglodytes ENSPTRG00000011299 possible_ortholog 1 retrogene
retro_ptro_88,
Rattus norvegicus ENSRNOG00000020595 ortholog_one2one 18 retrogenes
retro_rnor_1132, retro_rnor_1159, retro_rnor_1261, retro_rnor_1299, retro_rnor_1363, retro_rnor_1414, retro_rnor_1435, retro_rnor_1451, retro_rnor_1635, retro_rnor_1790, retro_rnor_2000, retro_rnor_2647, retro_rnor_385, retro_rnor_394, retro_rnor_538, retro_rnor_737, retro_rnor_835, retro_rnor_989,
Sorex araneus ENSSARG00000003236 ortholog_one2one 2 retrogenes
retro_sara_11, retro_sara_469,
Ictidomys tridecemlineatus ENSSTOG00000023443 possible_ortholog 2 retrogenes
retro_itri_1033, retro_itri_805,
Tupaia belangeri ENSTBEG00000016677 possible_ortholog 16 retrogenes
retro_tbel_125, retro_tbel_1361, retro_tbel_1753, retro_tbel_2071, retro_tbel_2207, retro_tbel_2808, retro_tbel_2947, retro_tbel_319, retro_tbel_3401, retro_tbel_3571, retro_tbel_3600, retro_tbel_3742, retro_tbel_449, retro_tbel_604, retro_tbel_801, retro_tbel_836,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_75 52.68 100.00
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Download FASTA sequences of all ENSEEUG00000003392 retrocopies