RetrogeneDB ID: | retro_pabe_1912 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 22:37383710..37384413(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OLA1 | ||
Ensembl ID: | ENSPPYG00000012943 | ||
Aliases: | None | ||
Description: | obg-like ATPase 1 [Source:RefSeq peptide;Acc:NP_001127505] |
Percent Identity: | 92.41 % |
Parental protein coverage: | 59.34 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MPPKKGGDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENF-PFCTIDPNESRVPVPDE |
.PPKKGGDGIKPPPIIGRFG.SLKIGIVGLPNVGKSTFFNVLTNSQ.SAENF.PFCTIDPNESRVPVPDE | |
Retrocopy | IPPKKGGDGIKPPPIIGRFGNSLKIGIVGLPNVGKSTFFNVLTNSQTSAENF<PFCTIDPNESRVPVPDE |
Parental | RFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED-DDITHVEGS |
RFDFLCQ..KPASKIP.FLNVVDIAGLVKGAHNGQGLGNAFLSH.SACDGIFHLTRAF...DDITHVE.S | |
Retrocopy | RFDFLCQHYKPASKIPTFLNVVDIAGLVKGAHNGQGLGNAFLSHFSACDGIFHLTRAFQE<DDITHVEES |
Parental | VDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWND |
VDP.RDIEIIHEELQLKDEEMI..IIDKLEKVAVRGGDKKLKP.YDIMCKVKSWVIDQKKPV.FYHDWND | |
Retrocopy | VDPVRDIEIIHEELQLKDEEMIRSIIDKLEKVAVRGGDKKLKPKYDIMCKVKSWVIDQKKPVHFYHDWND |
Parental | KEIEVLNKHLFLTSKPMVYLVNLSEKD |
KEIEVLNKHLFLTSKPMVYLVNLSEK. | |
Retrocopy | KEIEVLNKHLFLTSKPMVYLVNLSEKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 44 .12 RPM |
SRP007412_cerebellum | 0 .12 RPM | 42 .80 RPM |
SRP007412_heart | 0 .03 RPM | 20 .32 RPM |
SRP007412_kidney | 0 .00 RPM | 32 .52 RPM |
SRP007412_liver | 0 .00 RPM | 20 .69 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2593 |
Pan troglodytes | retro_ptro_1517 |
Gorilla gorilla | retro_ggor_1623 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006970 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005044 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007877 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000008681 | 1 retrocopy | |
Homo sapiens | ENSG00000138430 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022215 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000025196 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009296 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005817 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016557 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012943 | 2 retrocopies |
retro_pabe_1912 , retro_pabe_928,
|
Pan troglodytes | ENSPTRG00000012650 | 1 retrocopy | |
Sorex araneus | ENSSARG00000010743 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005517 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000009660 | 2 retrocopies |