RetrogeneDB ID: | retro_tsyr_394 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_10924:26898..27984(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OLA1 | ||
Ensembl ID: | ENSTSYG00000005517 | ||
Aliases: | None | ||
Description: | Obg-like ATPase 1 [Source:HGNC Symbol;Acc:28833] |
Percent Identity: | 94.48 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | KSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQ |
KSTFFNVLTNSQA.AENFPFCTIDPNESRVPVPDERFDFLC.YHKPASKIPAFLNVVDIAGLVKGAHNGQ | |
Retrocopy | KSTFFNVLTNSQAPAENFPFCTIDPNESRVPVPDERFDFLCRYHKPASKIPAFLNVVDIAGLVKGAHNGQ |
Parental | GLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRG |
GL.NAFLSHISACDGIF.LTRAFEDDDITHVEGSVDPI.DIEIIHEELQLKDEEMIGPIIDKLEK.AVRG | |
Retrocopy | GLENAFLSHISACDGIFQLTRAFEDDDITHVEGSVDPI*DIEIIHEELQLKDEEMIGPIIDKLEKAAVRG |
Parental | GDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWL |
GDKKLKPEYDIMCKVKSWVIDQ.KPV.FYHD.NDKEIEVLN.HLFLTSKPMVYLVNLSEKD.IRKKNKWL | |
Retrocopy | GDKKLKPEYDIMCKVKSWVIDQNKPVYFYHD*NDKEIEVLN*HLFLTSKPMVYLVNLSEKDCIRKKNKWL |
Parental | IKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYFFTAGPD |
IKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQ.ALPKII..GF.ALQLEYFFTAGPD | |
Retrocopy | IKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQNALPKIIRTGFVALQLEYFFTAGPD |
Parental | EVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIF |
EV.AWTIRKGTK.PQAAGKI.TDFEKG.IMAEVMKYEDFKEEGSENAVKA.GKYRQQGRNYIVEDGDIIF | |
Retrocopy | EVCAWTIRKGTKSPQAAGKIYTDFEKGLIMAEVMKYEDFKEEGSENAVKAVGKYRQQGRNYIVEDGDIIF |
Parental | FKFNTPQQPKKK |
FKFNTPQQPKKK | |
Retrocopy | FKFNTPQQPKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006970 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005044 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007877 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000008681 | 1 retrocopy | |
Homo sapiens | ENSG00000138430 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022215 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000025196 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009296 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005817 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016557 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012943 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012650 | 1 retrocopy | |
Sorex araneus | ENSSARG00000010743 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005517 | 2 retrocopies |
retro_tsyr_1845, retro_tsyr_394 ,
|
Vicugna pacos | ENSVPAG00000009660 | 2 retrocopies |