RetrogeneDB ID: | retro_sara_545 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_232485:71831..72747(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OLA1 | ||
Ensembl ID: | ENSSARG00000010743 | ||
Aliases: | None | ||
Description: | Obg-like ATPase 1 [Source:HGNC Symbol;Acc:28833] |
Percent Identity: | 82.28 % |
Parental protein coverage: | 77.53 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 8 |
Parental | PPKKG-GDGIKP-PPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQAAAENFPFCTIDPNESRVPVPDE |
PPK....DGIKP..P..GR.GTSLKIGIVGLPN.GKSTFF.VLTNSQAAAENFPFCTIDPN.SRVP.P.E | |
Retrocopy | PPKSTIWDGIKP<TPVTGRSGTSLKIGIVGLPNAGKSTFFSVLTNSQAAAENFPFCTIDPNTSRVPAPGE |
Parental | RFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHS-GQ-GLGNAFLS-HISACDGIFHLTRAFEDDDITHV- |
.FD.LCQYHKPAS.IPAFLNVVDIAGLVKG.H..GQ.GLGNAF.S..ISA.DG.FHL.RAFEDDD.TH.. | |
Retrocopy | GFDALCQYHKPASTIPAFLNVVDIAGLVKGSHM<GQ<GLGNAFVS<SISAWDGTFHLARAFEDDDVTHG< |
Parental | EGSVDPVRDIEIIHEELQLKDEEMIGPI-IDKLEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYH |
EGSVDPVRDIEI.HEELQ.KDEEMIGPI....LEKVAVRGGD.KLKPE.D.M.KVKSWV.DQKKPVRF.H | |
Retrocopy | EGSVDPVRDIEIVHEELQPKDEEMIGPI<LGELEKVAVRGGDRKLKPEHDTMSKVKSWVRDQKKPVRFCH |
Parental | DWNDKEIEVLNKYLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQEL |
DWND.E.EVLNKYLFLTSKPMVYLVNLSEKDYI.KKNKWL.KIKEWVDKYDPGALVIPFSGALELKLQEL | |
Retrocopy | DWNDNETEVLNKYLFLTSKPMVYLVNLSEKDYILKKNKWLVKIKEWVDKYDPGALVIPFSGALELKLQEL |
Parental | SAEERQKYLEANMTQSALP-KIIKAGF-AALQLEYF |
SAEE.QKYLEAN.TQSALP......GF..ALQLEYF | |
Retrocopy | SAEEGQKYLEANVTQSALP<R*LRLGF<PALQLEYF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006970 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005044 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007877 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000008681 | 1 retrocopy | |
Homo sapiens | ENSG00000138430 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022215 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000025196 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009296 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005817 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016557 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012943 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012650 | 1 retrocopy | |
Sorex araneus | ENSSARG00000010743 | 1 retrocopy |
retro_sara_545 ,
|
Tarsius syrichta | ENSTSYG00000005517 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000009660 | 2 retrocopies |