RetrogeneDB ID: | retro_pabe_324 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:177585274..177585896(+) | ||
Located in intron of: | ENSPPYG00000001352 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TRA2A | ||
Ensembl ID: | ENSPPYG00000017728 | ||
Aliases: | None | ||
Description: | transformer 2 alpha homolog (Drosophila) [Source:HGNC Symbol;Acc:16645] |
Percent Identity: | 81.52 % |
Parental protein coverage: | 74.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRY |
S.S.SHRRRS.S..YTPEY..RRSRSHSPMSNRRRHTG.RANPDPNTCL.VFGLSLYTT..DLREV.SRY | |
Retrocopy | SRSRSHRRRSSS--YTPEYLQRRSRSHSPMSNRRRHTGRRANPDPNTCLRVFGLSLYTTDKDLREVCSRY |
Parental | GPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRR-IRVDYSITKRAHTPTPGIYMGR |
GPL.G.NVVY.Q.TG.S.GFAFVYFE.IDDSKEAM.RAN..ELD.RR.IRVDYSITKR.HTPTPGIYMGR | |
Retrocopy | GPLNGANVVYNQQTGQSQGFAFVYFEGIDDSKEAMVRANRKELDDRR>IRVDYSITKRMHTPTPGIYMGR |
Parental | PTHSGGGGGGGGGGGGGGGGRRRDSYYDRGYDRGYDRYEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPRR |
.THS.GGG.GG..GG.GGG.R.RDSYYDRGYD.GYDRYE.YDY.YRR.SPSPYYSRYRS.SRS.SYSPRR | |
Retrocopy | TTHS-GGGRGGSKGGSGGGHRCRDSYYDRGYDHGYDRYENYDYQYRRQSPSPYYSRYRSQSRSHSYSPRR |
Parental | Y |
Y | |
Retrocopy | Y |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 37 .43 RPM |
SRP007412_cerebellum | 0 .00 RPM | 65 .66 RPM |
SRP007412_heart | 0 .00 RPM | 23 .24 RPM |
SRP007412_kidney | 0 .00 RPM | 34 .11 RPM |
SRP007412_liver | 0 .00 RPM | 30 .30 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001130 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001509 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007250 | 2 retrocopies | |
Homo sapiens | ENSG00000164548 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009053 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013480 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014794 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009733 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000017728 | 1 retrocopy |
retro_pabe_324 ,
|
Pongo abelii | ENSPPYG00000020314 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000020771 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000018988 | 1 retrocopy | |
Sorex araneus | ENSSARG00000012900 | 1 retrocopy |