RetrogeneDB ID: | retro_pabe_303 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:139866919..139868086(+) | ||
Located in intron of: | ENSPPYG00000001176 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RBMX | ||
Ensembl ID: | ENSPPYG00000020771 | ||
Aliases: | None | ||
Description: | RNA binding motif protein, X-linked [Source:HGNC Symbol;Acc:9910] |
Percent Identity: | 94.87 % |
Parental protein coverage: | 99.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNG |
VEADRPGKLFIGGLNTETNEKALE.VFGKYGRIVEVLL.KDRETNKSRGFAFVTFESPADAKDAARDMNG | |
Retrocopy | VEADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDMNG |
Parental | KSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFNMS |
KSLDGKAIKVEQATKPSFE.GR.GPPPPPRSRGPPRG...GRGGSGGTRGPPSRG.HMDDGGYSMNFNMS | |
Retrocopy | KSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSRG-HMDDGGYSMNFNMS |
Parental | SSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRD |
SSRGPLPVKRGPPPRSGGP.PKRSAPSG.VRSSSGMGGRAP.SRGRDSYGGPPRREPLPSRRDVYLSPRD | |
Retrocopy | SSRGPLPVKRGPPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPRD |
Parental | DGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGRDRDYSDHPSGGSY |
DGYSTKDSYSSRDYP.SRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGY.DRDGYGRDRDYSDHPSGGSY | |
Retrocopy | DGYSTKDSYSSRDYPNSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDGYGRDRDYSDHPSGGSY |
Parental | RDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPP |
RDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSG.DRVGRQERGLPP | |
Retrocopy | RDSYESYGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGCDRVGRQERGLPP |
Parental | SMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY |
S.ERGYP..RDSYSSSSRGAPRG.G.GGSRSDRG.GRSRY | |
Retrocopy | SVERGYPSSRDSYSSSSRGAPRGAGAGGSRSDRGEGRSRY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 3 .10 RPM | 25 .27 RPM |
SRP007412_cerebellum | 6 .44 RPM | 34 .53 RPM |
SRP007412_heart | 4 .40 RPM | 28 .21 RPM |
SRP007412_kidney | 2 .65 RPM | 34 .37 RPM |
SRP007412_liver | 3 .27 RPM | 19 .55 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_23 |