RetrogeneDB ID: | retro_chof_974 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_179011:2764..3392(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TRA2A | ||
Ensembl ID: | ENSCHOG00000001130 | ||
Aliases: | None | ||
Description: | transformer 2 alpha homolog (Drosophila) [Source:HGNC Symbol;Acc:16645] |
Percent Identity: | 54.88 % |
Parental protein coverage: | 75.53 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SEVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRV-SKHSESHSRSRSKSRSRSRRHSHRRYTR |
S...E.N...R.S.S.S.S..G.....KS......RS.S...S..S.S..RS...SRSRSRR.S.R.YTR | |
Retrocopy | SDNSEQNYH-RTSGSRSGSAHGSE---KSAGHTPARSHSKEDSRCSTSKPRSKYESRSRSRRIS*RNYTR |
Parental | SRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRR-HTGSRANPDPNTCLGVFGLSLYTTERDLREVF |
S.....SHR....SR.Y...Y.R..S.SHSPMS..R....G..AN.DP..CLGVF.LSLYT.ER.LREVF | |
Retrocopy | SWPQYSSHR*TC-SRFYSRDYHRPHSHSHSPMSTHRL>EVGNWANLDPISCLGVFWLSLYTIERNLREVF |
Parental | SRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYM |
S.YGP.......YDQ.......FAFVYFE..DDSKEA...AN.MELDG.RIRV..SITKR.HTPTPGIYM | |
Retrocopy | SKYGPIADMSIAYDQQSRLQKDFAFVYFENVDDSKEAKVYANEMELDGHRIRVHFSITKRWHTPTPGIYM |
Parental | GRPTH |
.RPT. | |
Retrocopy | QRPTY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001130 | 1 retrocopy |
retro_chof_974 ,
|
Choloepus hoffmanni | ENSCHOG00000012369 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000001509 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007250 | 2 retrocopies | |
Homo sapiens | ENSG00000164548 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009053 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013480 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014794 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009733 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000017728 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018988 | 1 retrocopy | |
Sorex araneus | ENSSARG00000012900 | 1 retrocopy |