RetrogeneDB ID: | retro_pcap_293 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_278743:213..760(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM49B | ||
Ensembl ID: | ENSPCAG00000002866 | ||
Aliases: | None | ||
Description: | family with sequence similarity 49, member B [Source:HGNC Symbol;Acc:25216] |
Percent Identity: | 69.19 % |
Parental protein coverage: | 60.73 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | ESEKEIYNQVNVVLKDAEGI-LEDLQSYRGAGHEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYEFSQ |
.S..EIYNQV.VVLKD...I.LE..QS...AGHEI.EAI.HP.D.KLQE.AWGAVV.L.G.LKKF..FS. | |
Retrocopy | QSKEEIYNQVVVVLKDVDDI>LEYWQSQSRAGHEIPEAI*HPEDGKLQENAWGAVVLLAGRLKKFHTFS* |
Parental | RLEAALRGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRI |
RLEAAL.GLLGAL.S...SPTQ.LE.EQALA.QFAEIL...L.FDELKMT..A.QN..SYYRRTLS.MRI | |
Retrocopy | RLEAALQGLLGALPSAL*SPTQLLEQEQALANQFAEILQ--LQFDELKMTSSALQNNVSYYRRTLSHMRI |
Parental | NNVPAEGENEVNNELANRMSLFYAEATPMLKTLSDATTKFVSENK |
NNVPAEGE..VN.ELAN.MSLFY.EATP.LK.LSD..T......K | |
Retrocopy | NNVPAEGE**VNDELAN*MSLFYVEATPTLKSLSDIATEYALDRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000009323 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000005160 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015647 | 1 retrocopy | |
Felis catus | ENSFCAG00000015625 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013690 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000002866 | 3 retrocopies |
retro_pcap_293 , retro_pcap_332, retro_pcap_40,
|
Sus scrofa | ENSSSCG00000005959 | 1 retrocopy |