RetrogeneDB ID: | retro_dord_381 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_14970:3601..4191(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Fam49b | ||
Ensembl ID: | ENSDORG00000005160 | ||
Aliases: | None | ||
Description: | family with sequence similarity 49, member B [Source:MGI Symbol;Acc:MGI:1923520] |
Percent Identity: | 51.74 % |
Parental protein coverage: | 61.61 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | EQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVNNELANRMSLFYAEA |
EQA.AKQFA.ILHFT..FDEL...N......F...........INNVP.......NNELAN.MS.F.... | |
Retrocopy | EQAFAKQFA*ILHFTSQFDELT-NNKSCHTEFRCSKSRVNCIVINNVPIGDKR--NNELAN*MSFFIY*G |
Parental | TPMLKTLSDATTKFVSENKNL-IENTTDCLSTMASVCRVMLETPEYRSRFTNEETVSFCLRVMVGVIILY |
.P....LS...TKF.SEN.N..I.N.TD..STMAS.C.V.L.T.E...RFT.EE..SF.LR.MV.V.ILY | |
Retrocopy | DPQCWKLSEVMTKFLSENENSPIDNITDSFSTMASACTVLLKTLESKCRFTKEEKMSFYLREMVCVNILY |
Parental | DH-VHPVGAFAKTSKIDMKGCIKVLKDQPPNSVEGLLNALRYTTKHLNDETTSKQIKSMLQ |
DH..H.V....KT..IDMKG...V..DQ.P...EG..N..RY..KHL..ETTS.Q.KS.LQ | |
Retrocopy | DH<SHLVRSI*KT*NIDMKGRFIVFNDQLPYNAEGC*NTFRYILKHLSHETTSNQVKSLLQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000009323 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000005160 | 1 retrocopy |
retro_dord_381 ,
|
Echinops telfairi | ENSETEG00000015647 | 1 retrocopy | |
Felis catus | ENSFCAG00000015625 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013690 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000002866 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000005959 | 1 retrocopy |