Parental gene:

FAM49B, ENSSSCG00000005959

Aliases:None
Description:family with sequence similarity 49, member B [Source:HGNC Symbol;Acc:25216]
Organism:Pig (Sus scrofa)
Coordinates:4:10801065..10859545(+)


>ENSSSCG00000005959
ATGGGGAATCTTCTTAAAGTTTTGACATGCACAGACCTTGAGCAGGGGCCAAATTTTTTCCTTGATTTTGAAAATGCCCA
GCCTACAGAATCTGAGAAGGAAATTTATAATCAGGTGAATGTAGTGCTAAAAGATGCAGAGGGCATCTTGGAGGACTTGC
AGTCATATAGAGGAGCTGGCCATGAAATACGAGAGGCAATCCAACATCCAGCAGATGAGAAGTTGCAAGAGAAGGCATGG
GGTGCAGTTGTTCCACTAGTAGGCAAATTAAAGAAATTTTACGAATTTTCTCAGAGGTTAGAAGCAGCCTTAAGAGGTCT
TCTGGGAGCCTTGACAAGTACCCCATACTCTCCCACCCAGCATCTAGAGCGAGAGCAGGCTCTTGCTAAACAGTTCGCAG
AAATTCTTCATTTTACACTCCGGTTTGATGAACTCAAGATGACAAATCCTGCCATACAGAATGATTTCAGCTATTATAGA
AGAACATTGAGTCGTATGAGGATTAATAATGTTCCAGCAGAAGGAGAAAATGAAGTAAATAATGAATTGGCAAATCGAAT
GTCTTTGTTTTATGCTGAGGCAACCCCAATGCTGAAAACCTTAAGTGATGCCACAACAAAATTTGTATCAGAGAATAAAA
ATTTACCGATAGAAAACACCACAGATTGTCTAAGCACCATGGCTAGTGTGTGCAGAGTCATGCTTGAAACGCCGGAATAC
AGAAGCAGGTTCACCAATGAGGAGACAGTGTCATTCTGCTTGAGGGTAATGGTGGGCGTCATAATACTCTACGACCACGT
ACATCCAGTGGGAGCATTTGCCAAAACTTCCAAAATTGATATGAAAGGTTGTATCAAAGTTCTTAAGGACCAGCCACCTA
ATAGCGTAGAAGGTCTTCTCAATGCTCTCAGGTACACAACAAAACATTTGAATGATGAGACTACCTCCAAGCAGATTAAA
TCCATGCTGCAATAA

Library Parental gene expression (RPM)
SRP014902_placenta 16 .72 RPM
SRP014902_testis 19 .66 RPM
SRP018288_heart 15 .32 RPM
SRP018288_kidney 10 .24 RPM
SRP018288_liver 7 .84 RPM
SRP018288_lung 45 .31 RPM
SRP018856_adipose 11 .02 RPM
SRP035408_brain 43 .45 RPM
SRP035408_liver 15 .24 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000009323 ortholog_one2one 3 retrogenes
retro_dnov_1596, retro_dnov_1723, retro_dnov_896,
Dipodomys ordii ENSDORG00000005160 ortholog_one2one 1 retrogene
retro_dord_381,
Echinops telfairi ENSETEG00000015647 ortholog_one2one 1 retrogene
retro_etel_1299,
Felis catus ENSFCAG00000015625 ortholog_one2one 1 retrogene
retro_fcat_1690,
Oryctolagus cuniculus ENSOCUG00000013690 ortholog_one2one 1 retrogene
retro_ocun_953,
Procavia capensis ENSPCAG00000002866 ortholog_one2one 3 retrogenes
retro_pcap_293, retro_pcap_332, retro_pcap_40,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_978 83.13 50.93
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Download FASTA sequences of all ENSSSCG00000005959 retrocopies