RetrogeneDB ID: | retro_pcap_332 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_39106:6316..7140(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM49B | ||
Ensembl ID: | ENSPCAG00000002866 | ||
Aliases: | None | ||
Description: | family with sequence similarity 49, member B [Source:HGNC Symbol;Acc:25216] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 91.75 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | AQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHPADEKLQEKAWGAVVPLVGKLKKFYE |
.Q.TESE.EIYNQV..VLKD..G.LEDLQSYRGAGHE...AI.HPADEKLQ......V.PLVGK.KK..E | |
Retrocopy | SQLTESENEIYNQVTAVLKDIGGTLEDLQSYRGAGHETLGAIRHPADEKLQGR--DTVLPLVGKFKKLSE |
Parental | FSQRLEAALRGLLGA-LTSTPYSPTQHLEREQALAK-QFAEILHFTLRFDELKMTNPAIQNDFSYYRRTL |
.SQ..EAAL.GL.GA.LT.TP.SPTQHLEREQA....Q.AE.LHF.L..DELK.TN..I.N.FSY..R.L | |
Retrocopy | ISQWFEAALLGLQGA>LTGTP*SPTQHLEREQAVTN<QVAESLHFPLPSDELKVTNSTIPNIFSYHQRIL |
Parental | SRMRINNVPAEGENEVNNELANRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRV |
..MRI.NV....ENEVNN.LAN.MSLF.AEATPML.TLSD.TTKFVSEN.NL..ENT...........RV | |
Retrocopy | CYMRIYNVSEKRENEVNNALANQMSLFHAEATPMLTTLSDITTKFVSENTNLLPENTR-VFKLHSTMYRV |
Parental | MLETPEYRSRFTNEETVSFCL-RVMVGVIIL-YDHVHPVGAFAKTSKIDMKGCIKVLKDQPPNSVEGLLN |
.LE....RSRFTNEETVSFCL..V..G..IL.YDHVH.VG.FAKT.K.DMK.CIK.LKD.PPNSV.GLL. | |
Retrocopy | TLEKQVHRSRFTNEETVSFCL>GVTEGILIL>YDHVHLVGVFAKTAKNDMKCCIKLLKDLPPNSV-GLLI |
Parental | AL |
AL | |
Retrocopy | AL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000009323 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000005160 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015647 | 1 retrocopy | |
Felis catus | ENSFCAG00000015625 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013690 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000002866 | 3 retrocopies |
retro_pcap_293, retro_pcap_332 , retro_pcap_40,
|
Sus scrofa | ENSSSCG00000005959 | 1 retrocopy |