RetrogeneDB ID: | retro_pcap_377 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_57730:5660..6285(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1L2 | ||
Ensembl ID: | ENSPCAG00000001867 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A1-like 2 [Source:HGNC Symbol;Acc:27067] |
Percent Identity: | 82.78 % |
Parental protein coverage: | 55.56 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DPNTKRSRGFGFVTYS-TVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLVKK--FVGG--EDT |
DP.TKRS.G.GFVTYS.T.EEV.AAMN.RPHKVDGR.VEPKRAVSREDSQRPGAHL..K..FVGG..ED. | |
Retrocopy | DPYTKRSSGQGFVTYS>TAEEVEAAMNTRPHKVDGRAVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDI |
Parental | EHH--RDYFEQYGKIEV-EIMTDRGSGKKR-FAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM |
..H..RDYFEQYGK.EV.EIMTD.GSGKK..F.FVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM | |
Retrocopy | QEHLLRDYFEQYGKTEVTEIMTDQGSGKKKGFTFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM |
Parental | ASASSSQRGRSGSGNFGGGRGGGFVGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGGYGG |
ASASSSQRGRSGSGNFGGGRGGGFVGNDNFGRGGNFSGR........GGGYGG.GDGYNGFGNDGG..G | |
Retrocopy | ASASSSQRGRSGSGNFGGGRGGGFVGNDNFGRGGNFSGRXXXXXXXXGGGYGGRGDGYNGFGNDGGNFG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000009228 | 7 retrocopies | |
Loxodonta africana | ENSLAFG00000029587 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000004620 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005735 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000013350 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000012248 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000001867 | 5 retrocopies | |
Procavia capensis | ENSPCAG00000011543 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025850 | 4 retrocopies |