RetrogeneDB ID: | retro_pcap_435 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_86528:9902..10624(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1L2 | ||
Ensembl ID: | ENSPCAG00000001867 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A1-like 2 [Source:HGNC Symbol;Acc:27067] |
Percent Identity: | 91.32 % |
Parental protein coverage: | 64.72 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNT-KRSRGFGFVTYSTVEEVD |
MSKSESPKEPEQLRKLFIGGLSFETTDESLRSH.EQ.GTL.DCVV.RDPNT.KRSRGFGFVTYSTVEEVD | |
Retrocopy | MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHCEQRGTLMDCVVPRDPNT<KRSRGFGFVTYSTVEEVD |
Parental | AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLVKK--FVGG--EDTEHH--RDYFEQYGKIEV-EIMTD |
AAMNA.PHKVDGRVVEPKRAVSREDSQ.PGAHL..K..FVGG..EDTE.H..RDYFEQYGK.EV.EIMTD | |
Retrocopy | AAMNAGPHKVDGRVVEPKRAVSREDSQSPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKTEVTEIMTD |
Parental | RGSGKKR-FAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGG |
RGSGKKR.FAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGG | |
Retrocopy | RGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGG |
Parental | FVGNDNFGRGGNFSGRGGFGGSRGGGGYGGSG |
FVGNDNFG..GNFSGRGGFGGSRGGGGYGGSG | |
Retrocopy | FVGNDNFGSRGNFSGRGGFGGSRGGGGYGGSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000009228 | 7 retrocopies | |
Loxodonta africana | ENSLAFG00000029587 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000004620 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005735 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000013350 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000012248 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000001867 | 5 retrocopies | |
Procavia capensis | ENSPCAG00000011543 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025850 | 4 retrocopies |