RetrogeneDB ID: | retro_pcap_67 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_3732:71605..72550(-) | ||
Located in intron of: | ENSPCAG00000000381 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSPCAG00000016429 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371] |
Percent Identity: | 96.25 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MPREDRATWKS-NYFL-KIIQLLDDYPKCFIVGADNVGSKQMQQIRMSL-RGKAVVLMGKNTMMRKAIRG |
MPREDR.TWKS..YFL.KIIQLLDDYPKCFIVGADNVGSKQMQQIRMSL.RGKAVVLMGKNTMMRKAIRG | |
Retrocopy | MPREDRVTWKS<HYFL<KIIQLLDDYPKCFIVGADNVGSKQMQQIRMSL<RGKAVVLMGKNTMMRKAIRG |
Parental | HLENNPALEKLLLHIRGNV-FVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSF |
HLENNPALEKLL.HIRGNV.FVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKT.F | |
Retrocopy | HLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTFF |
Parental | FQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDIT |
FQALGITTKI.RGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYN.EVLDIT | |
Retrocopy | FQALGITTKIFRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNLEVLDIT |
Parental | EDTLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVA |
EDTLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVA | |
Retrocopy | EDTLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVA |
Parental | AAPVAAAAAAAPAAASAPAKVEAKEESEESDEDMGFGLFD |
AAPVAAAA..APAAASAPAKVEAKEESEESDEDMGFGLFD | |
Retrocopy | AAPVAAAA-TAPAAASAPAKVEAKEESEESDEDMGFGLFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |