RetrogeneDB ID: | retro_pcap_85 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | GeneScaffold_4735:70690..71194(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FTL | ||
Ensembl ID: | ENSPCAG00000013227 | ||
Aliases: | None | ||
Description: | ferritin, light polypeptide [Source:HGNC Symbol;Acc:3999] |
Percent Identity: | 52.91 % |
Parental protein coverage: | 96.57 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | QNYSA-DAEANVNLLVNLHLRASYTYLSLGFYFDRDDVALQGVGHFFRELAKEKREGAERLLKLQN-QRG |
.NYS....E...N.L.NL....S..YLSLGFYF..D.V.L.G..H.F.EL...K.EGAE.LLK..N.Q.. | |
Retrocopy | ENYST<QVEGTINCLANLYPWTSCIYLSLGFYFGYDNVVLKGMCHLFHELVHKKHEGAEHLLKM*N<QCS |
Parental | GRALFQDVEKPSRDEWGETLDAMEAALALELSLNEALLKLHAVASAQADPHLCDFLENHFLDEEVKLIKK |
G....Q....P.R.EWG..LDA.EAA..LE...N.A.L.LHAV.S...D....DFLE.HFLDEEV..... | |
Retrocopy | GHTHLQEMQRPPRNEWGRDLDAIEAAMVLEKNSN*AFLYLHAVESMHTDSRV*DFLESHFLDEEVEFLRQ |
Parental | MGDHLTNIRRVVGSQAGLGEY-LFERLTLKHD |
MGDHLTN..R......G.GEY.LF.RLTLKHD | |
Retrocopy | MGDHLTNFCRLISPKSGPGEY<LFKRLTLKHD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |