RetrogeneDB ID:

retro_pper_32

Retrocopy
location
Organism:Peach (Prunus persica)
Coordinates:scaffold_6:14656630..14659789(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:PRUPE_ppa023487mg
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:PRUPE_ppa000714mg
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_pper_32
ATGGGGAGCGAGAGCAATCTGAATACATGGGTATCCGATAAGTTGATGACGTTGCTCGGATATTCTCAGCCTACTGTTGT
TCAGTACATTATTGGATTGACCAAACAGGCAAAATCACCGGCTGATGTTGTGGGCAAGCTTGTAGAATTAGAATTTGGGT
TGTCATCTTCGGCCGAAACAAGTGCATTTGCTGAAGACATCTTCGCAAGAGTGCCCCGTAAAGAATCTGGTTTGAATCTA
TATCAGAAACAAGAGAGGGAAGCTGCCATGTTGGTGAAGAAGCAGAAGACATATTCTCTCTTGGATGCAGATGACGAAGA
TGACAATGATGGCGATACATCTTCTGCCCAGGTTATTTCCAAGTCCAGGAAAGCTGATTCCCATAAGAAACGATTCAGGA
AGAAGGTCTTGAGTCAAGAAGATGAAGATGATGAGGTGATTGCACAAGAGGGACAAGTGAGACGAGTTAAAAGACGAACT
TGTTCCCCAGATGACGATGATGGTTCAGAGTCAGAAGAGGAAAGATTGCGTGATCAAAGAGAGAGGGAGCAATTGGAGCA
GAATATAAGGGAACGGGATACAGCAGCTACACGAAAGTTAACGGACAGAAAATTAACACGAAAGGAAGAAGAGGAGAATA
TTCGGAGAAGCAATGCATTGGAGCGGAATGACCTCGAAGATTTAAGAAAAGTTTCAAGACAAGAATATCTCAAAAAGAGG
GAGCAAAAGAAATTGGAGGAAATCAGAGACGATATAGAGGATGAGCAATACTTATTTGATGGCGTGAAGCTCACTGAAGC
AGAATATAGTGAACTAAGCTACAAGAAACAAATATACGAACTGGTGAAGAAGAGGTCAGATGAGGTTGAGGATATCACTG
AGTACAGGATGCCAGATGCGTATGATGAGGAGGGTGGTGTTAATCAGGAAAAGAGATTTTCTGTGGCTGTGCAACGATAC
AGGGACCTCAGTGCTGGGGATAAAATGAACCCATTTGCAGAACAGGAAGCTTGGGAGGATCACCAAATTGGAAAAGCAAC
GCTGAAATTTGGTTCAAAAAACAAAAAACAAAAATCTGATGAGTATCAATTTGTATTTGAGGATCAGATTGATTTTATCA
AGGCATCAGTGATGGATGGTGATGAGTTTGATGATGACAGGCAACCCTCTGAGTTACTTGGGTCGAAGGCGAAATCGGGC
TTAGAGAAGCTCCAGGATGACAGAAAAACACTACCCATCTACACCTACCGTGATAAATTGCTTGAAGCTGTTGAAAATCA
TCAAGTTCTGGTTATTGTTGGGGAAACTGGTTCTGGAAAAACTACGCAGATACCCCAATATCTTCATGAGGCTGGATACA
CAAAGCGTGGAAAGATTGGGTGCACACAGCCACGGCGAGTTGCTGCTATGAGTGTTGCTGCAAGGGTTTCTCAAGAAATG
GGGGTCAAACTTGGGCACGAGGTTGGTTATTCTATTCGTTTTGAGGATTGCACATCCGAAAAGACTGTTTTGAAATATAT
GACAGATGGAATGTTGTTGCGAGAATTCCTTGGTGAACCAGATCTGGCGAGTTACAGTGTGGTGATGGTGGACGAGGCCC
ATGAACGAACACTCTCAACTGATATTCTATTTGGACTAGTGAAGGATATTGCTCGATTTAGACCAGATCTCAAACTGCTT
ATCTCAAGTGCAACGCTTGATGCTGAGAAGTTCAGTGATTATTTTGATTCTGCTCCAATTTTCAAAATTCCAGGGAGGCG
GTATGCTGTTGATATCCATTACACGAAAGCACCAGAAGCCGATTACTTAGATGCAGCAATTGTCACTGCACTTCAAATCC
ATGTGACGCAACCACCTGGAGATATATTGGTATTCCTCACTGGTCAGGAAGAGATTGAAACAGCAGAAGAAATATTGAAG
CACAGAACAAGGGGCCTAGGGACAAAAATTGCTGAGCTGATTATTTGCCCCATATATGCAAACCTACCTACTGAGCTGCA
AGCAAAAATTTTTGAAGCCACACCTGATGGGGCAAGGAAGGTTGTCCTTGCCACAAATATAGCTGAAACTTCGTTGACCA
TTGATGGGATCAAATATGTTATTGACCCAGGGTTTTGCAAGATGAAGTCGTATAACCCAAGGACTGGAATGGAGTCATTG
CTAGTTACTCCCATCTCAAAGGCATCAGCAATGCAGAGGGCAGGTCGATCTGGTCGAACGGGTCCTGGAAAGTGCTTCCG
GTTATATACTGCCTACAATTATTACAATGATTTAGATGATAACACAGTACCAGAAGTACAAAGAACTAATCTTGCAAATG
TTGTGCTTACGCTGAAGAGCCTTGGTATTCATGACTTATTGCATTTTGATTTTATGGACCCTCCGCCATCTGAAGCGTTA
CTGAAAGCCCTGGAACTGTTATTTGCACTAAGTGCATTAAATAAAGTGGGTGAGTTGACTAAAGTGGGTAGAAGGATGGC
GGAGTTTCCTCTTGATCCCATGCTATCTAAGATGATAGTTGCTTCTGATCAGTACAAGTGTTCAGATGAAGTCATTTCCA
TTGCTGCCATGCTTTCCATTGGTAATTCCATCTTTTACCGTCCCAAGGACAAACAAGTCCATGCTGACAATGCTCGTTTG
AATTTTCACACCGGGAATGTGGGAGATCACATTGCATTGCTCAAGGTCTATAACTCATGGAAAGAGACCAACTTCTCAAC
CCAGTGGTGTTATGAAAACTATATACAGGTGAGGAGCATGAAGCGTGCTAGAGATATTAGAGACCAGCTTGAGGGACTCT
TGGAGAGGGTTGAGATTGAGCTGGTCTCAAATCTCAGTGATTACGAGACCATAAAGAAGGCCATTACATCTGGCTTCTTC
CCTCATTCCGCAAAGCTTCAAAAGAATGGATCTTATAGAACAGTCAAACATCCACAGACTGTTCATATACATCCCAGCTC
AGGGCTGTCACAGGTGCTTCCGAGATGGGTTATATACCATGAATTGGTACTTACAACCAAGGAATATATGAGACAGGTAA
CAGAATTAAAGCCGGAGTGGTTAGTGGAAATAGCTCCTCATTATTACCAGCTGAAGGATGTTGAAGATTCGATGTCAAAG
AAAATGCCCCGGGGAGAAGGGCGCCCACAACAGGATTGA

ORF - retro_pper_32 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.92 %
Parental protein coverage: 63.16 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalEDDRKTLPIYTYRDQLLEAVENHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKIGCTQPRRVAAMSVAA
.DDRKTLPIYTYRD.LLEAVENHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKIGCTQPRRVAAMSVAA
RetrocopyQDDRKTLPIYTYRDKLLEAVENHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKIGCTQPRRVAAMSVAA
ParentalRVSQEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILF
RVSQEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILF
RetrocopyRVSQEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILF
ParentalGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEIHYTKAPEADYLDAAIVTALQIH
GLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRY.V.IHYTKAPEADYLDAAIVTALQIH
RetrocopyGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYAVDIHYTKAPEADYLDAAIVTALQIH
ParentalVTQPPGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEATPDGARKVVLA
VTQPPGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEATPDGARKVVLA
RetrocopyVTQPPGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEATPDGARKVVLA
ParentalTNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASAMQRAGRSGRTGPGKCFRLYTAYNY
TNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASAMQRAGRSGRTGPGKCFRLYTAYNY
RetrocopyTNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASAMQRAGRSGRTGPGKCFRLYTAYNY
ParentalYNDLDDNTVPEVQRTNLANVVLTLKSLGIHDLLHFDFMDPPPSEALLKALELLFALSALNKVGELTKVGR
YNDLDDNTVPEVQRTNLANVVLTLKSLGIHDLLHFDFMDPPPSEALLKALELLFALSALNKVGELTKVGR
RetrocopyYNDLDDNTVPEVQRTNLANVVLTLKSLGIHDLLHFDFMDPPPSEALLKALELLFALSALNKVGELTKVGR
ParentalRMAEFPLDPMLSKMIVASDKYKCSDEVISIAAMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALL
RMAEFPLDPMLSKMIVASD.YKCSDEVISIAAMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALL
RetrocopyRMAEFPLDPMLSKMIVASDQYKCSDEVISIAAMLSIGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALL
ParentalKVYNSWKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELVSNLSDYETIKKAITSGFFPHSA
KVYNSWKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELVSNLSDYETIKKAITSGFFPHSA
RetrocopyKVYNSWKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELVSNLSDYETIKKAITSGFFPHSA
ParentalKLQKNGSYRTVKHPQTVHIHPSSGLSQVLPRWVIYHELVLTTKEYMRQVTELKPEWLVEIAPHYYQLKDV
KLQKNGSYRTVKHPQTVHIHPSSGLSQVLPRWVIYHELVLTTKEYMRQVTELKPEWLVEIAPHYYQLKDV
RetrocopyKLQKNGSYRTVKHPQTVHIHPSSGLSQVLPRWVIYHELVLTTKEYMRQVTELKPEWLVEIAPHYYQLKDV
ParentalEDLMSKKMPRGEGRAQQD
ED.MSKKMPRGEGR.QQD
RetrocopyEDSMSKKMPRGEGRPQQD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Prunus persica was not studied using RNA-Seq expression data.
Prunus persica was not studied using ChIP-Seq data.
Prunus persica was not studied using EST data.
Prunus persica was not studied using FANTOM5 data.
retro_pper_32 was not experimentally validated.

Retrocopy orthology:
Prunus persica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 15 retrocopies.

Species Parental gene accession Retrocopies number
Oryza sativa indicaBGIOSGA0271621 retrocopy
Brassica oleracea Bo5g0870701 retrocopy
Brassica rapa Bra0101681 retrocopy
Brachypodium distachyon BRADI1G612201 retrocopy
Glycine max GLYMA06G218211 retrocopy
Leersia perrieri LPERR08G092601 retrocopy
Hordeum vulgare MLOC_55891 retrocopy
Oryza meridionalis OMERI08G090701 retrocopy
Oryza nivara ONIVA08G117801 retrocopy
Oryza punctata OPUNC08G103501 retrocopy
Oryza glaberrima ORGLA08G00986001 retrocopy
Oryza rufipogon ORUFI08G124101 retrocopy
Prunus persica PRUPE_ppa000714mg 1 retrocopy
retro_pper_32 ,
Sorghum bicolor Sb04g0224601 retrocopy
Setaria italica Si021302m.g1 retrocopy



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