RetrogeneDB ID: | retro_ptro_1730 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 2B:200231961..200232660(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AHCY | ||
Ensembl ID: | ENSPTRG00000013414 | ||
Aliases: | None | ||
Description: | Adenosylhomocysteinase [Source:UniProtKB/TrEMBL;Acc:H2QK78] |
Percent Identity: | 74.79 % |
Parental protein coverage: | 54.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | SLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQ |
SL.DGI..AT.V..A.KV.V..GYG.VGK.CAQALRGF...VI.TEIDPINALQAAME.YEVTTMD.ACQ | |
Retrocopy | SLTDGIMQATEVVTASKVVVIVGYGNVGKDCAQALRGFVDHVIVTEIDPINALQAAMESYEVTTMDKACQ |
Parental | EGNIFVTTTGCIDIILGRHFEQMKDDAIVC-NIG-HFDVEIDVKWLNENAVEKVNIKP-QVDRYRLKNGR |
E..IFVTTTGC.D.IL..HF.QMKDDAI...N.G.HFD.EIDVKWLN.NAVEK.NIKP.QVD...LKNG. | |
Retrocopy | E-DIFVTTTGCNDSILDWHFKQMKDDAIMV<NTG<HFDMEIDVKWLNKNAVEKMNIKP<QVDCSWLKNGC |
Parental | RIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVHFLPKKLDEAVAEAHLGKLNV |
.IILLAEG.LVNLGC.MGHP...MSNS.TNQVMAQIELWTHPDKYP..VHF.PKKLDEAV.EAH..KLN. | |
Retrocopy | CIILLAEGWLVNLGCVMGHPNSLMSNSLTNQVMAQIELWTHPDKYPIRVHFGPKKLDEAVLEAHWSKLNE |
Parental | KLTKLTEKQAQYLGMSCDGPFKPDHYRY |
KLTKLTEKQA.YLGMS.D.PF....Y.Y | |
Retrocopy | KLTKLTEKQALYLGMSGDSPFESNPYCY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .04 RPM | 36 .75 RPM |
SRP007412_cerebellum | 0 .04 RPM | 19 .04 RPM |
SRP007412_heart | 0 .00 RPM | 25 .94 RPM |
SRP007412_kidney | 0 .00 RPM | 149 .14 RPM |
SRP007412_liver | 0 .00 RPM | 107 .07 RPM |
SRP007412_testis | 0 .00 RPM | 149 .75 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2365 |
Gorilla gorilla | retro_ggor_1795 |
Callithrix jacchus | retro_cjac_2839 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018303 | 7 retrocopies | |
Echinops telfairi | ENSETEG00000002576 | 1 retrocopy | |
Homo sapiens | ENSG00000101444 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000014694 | 5 retrocopies | |
Monodelphis domestica | ENSMODG00000002753 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027597 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010041 | 4 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008592 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010935 | 9 retrocopies | |
Pan troglodytes | ENSPTRG00000013414 | 7 retrocopies |
retro_ptro_1015, retro_ptro_1698, retro_ptro_1730 , retro_ptro_2860, retro_ptro_3011, retro_ptro_559, retro_ptro_771,
|
Rattus norvegicus | ENSRNOG00000017777 | 7 retrocopies | |
Sus scrofa | ENSSSCG00000007278 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000007163 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000003632 | 1 retrocopy | |
Xenopus tropicalis | ENSXETG00000019486 | 1 retrocopy |