Parental gene:

AHCY, ENSPPYG00000010935

Aliases:None
Description:adenosylhomocysteinase [Source:HGNC Symbol;Acc:343]
Organism:Orangutan (Pongo abelii)
Coordinates:20:31459715..31482513(-)


>ENSPPYG00000010935
ATGTCTGACAAACTGCCCTACAAAGTCGCTGACATCGGCCTGGCTGCCTGGGGACGCAAGGCCCTGGACATTGCCGAGAA
TGAGATGCCGGGCCTGATGCGTATGCGGGAGCGGTACTCGGCCTCCAAGCCACTGAAGGGCGCCCGCATCGCTGGCTGCC
TGCACATGACCGTGGAGACGGCCGTCCTCATTGAGACTCTCGTCACCCTGGGTGCTGAGGTGCAGTGGTCCAGCTGCAAC
ATCTTCTCCACCCAGGACCATGCGGCGGCTGCCATTGCCAAGGCTGGCATTCCGGTGTATGCCTGGAAGGGCGAAACGGA
TGAGGAGTACCTGTGGTGCATTGAACAGACCCTGTACTTCAAGGACGGACCCCTCAACATGATTCTGGACGATGGGGGTG
ACCTCACCAACCTCATCCACACCAAGTACCCACAGCTCCTGCCAGGCATCCGAGGCATCTCTGAGGAGACCACGACTGGG
GTCCACAACCTCTACAAGATGATGGCCAATGGGATCCTCAAGGTGCCTGCCATCAATGTCAACGACTCCGTCACCAAGAG
CAAGTTTGACAACCTCTATGGCTGCCGGGAGTCCCTCATAGATGGCATCAAGCGGGCCACAGATGTGATGATTGCCGGCA
AGGTAGCGGTGGTAGCAGGCTATGGCGATGTGGGCAAGGGCTGTGCCCAGGCCCTGCGGGGTTTCGGAGCCCGTGTCATC
ATCACCGAGATTGACCCCATCAACGCACTGCAGGCTGCCATGGAGGGCTATGAGGTGACCACCATGGATGAGGCCTGTCA
GGAGGGCACCATCTTTGTCACCACCACAGGCTGTGTTGACATCATCCTTGGCCGGCACTTTGAGCAGATGAAGGATGATG
CCATTGTGTGTAACATTGGACACTTTGACGTGGAGATCGATGTCAAGTGGCTCAACGAGAACGCTGTGGAGAAGGTGAAC
ATCAAGCCACAGGTGGACCGGTATCGGTTGAAGAATGGGCGCCGCATCATCCTGCTGGCTGAGGGTCGGCTGGTCAACCT
GGGTTGTGCCATGGGCCACCCCAGCTTCGTGATGAGTAACTCCTTCACTAACCAGGTGATGGCGCAGATCGAGCTGTGGA
CCCATCCAGACAAGTACCCCGTTGGGGTTCACTTCCTGCCCAAGAAGCTGGATGAGGCAGTGGCTGAAGCCCACCTGGGC
AAGCTGAATGTGAAGTTGACCAAGCTAACTGAGAAGCAAGCCCAGTACCTGGGCATGTCCCGTGATGGCCCCTTCAAGCC
GGATCACTACCGCTACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 31 .63 RPM
SRP007412_cerebellum 24 .69 RPM
SRP007412_heart 19 .27 RPM
SRP007412_kidney 184 .63 RPM
SRP007412_liver 64 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000018303 ortholog_one2one 7 retrogenes
retro_cjac_1028, retro_cjac_1248, retro_cjac_1806, retro_cjac_2132, retro_cjac_2839, retro_cjac_3287, retro_cjac_480,
Echinops telfairi ENSETEG00000002576 ortholog_one2one 1 retrogene
retro_etel_444,
Homo sapiens ENSG00000101444 ortholog_one2one 6 retrogenes
retro_hsap_1496, retro_hsap_2325, retro_hsap_2365, retro_hsap_4213, retro_hsap_571, retro_hsap_803,
Gorilla gorilla ENSGGOG00000014694 ortholog_one2many 5 retrogenes
retro_ggor_1148, retro_ggor_1795, retro_ggor_2822, retro_ggor_3087, retro_ggor_511,
Monodelphis domestica ENSMODG00000002753 ortholog_one2one 1 retrogene
retro_mdom_1974,
Mus musculus ENSMUSG00000027597 ortholog_one2many 1 retrogene
retro_mmus_197,
Nomascus leucogenys ENSNLEG00000010041 possible_ortholog 4 retrogenes
retro_nleu_1717, retro_nleu_2785, retro_nleu_40, retro_nleu_929,
Oryctolagus cuniculus ENSOCUG00000008592 ortholog_one2one 1 retrogene
retro_ocun_1886,
Pan troglodytes ENSPTRG00000013414 ortholog_one2one 7 retrogenes
retro_ptro_1015, retro_ptro_1698, retro_ptro_1730, retro_ptro_2860, retro_ptro_3011, retro_ptro_559, retro_ptro_771,
Rattus norvegicus ENSRNOG00000017777 ortholog_one2many 7 retrogenes
retro_rnor_1142, retro_rnor_1820, retro_rnor_1903, retro_rnor_2120, retro_rnor_569, retro_rnor_647, retro_rnor_839,
Sus scrofa ENSSSCG00000007278 possible_ortholog 1 retrogene
retro_sscr_119,
Tarsius syrichta ENSTSYG00000007163 ortholog_one2one 3 retrogenes
retro_tsyr_1178, retro_tsyr_1529, retro_tsyr_1582,
Tursiops truncatus ENSTTRG00000003632 ortholog_one2one 1 retrogene
retro_ttru_1666,
Xenopus tropicalis ENSXETG00000019486 ortholog_one2one 1 retrogene
retro_xtro_62,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_647 76.25 59.49
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2. retro_pabe_658 77.74 64.35
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3. retro_pabe_665 79.64 62.96
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4. retro_pabe_718 76.34 93.75
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5. retro_pabe_1247 78.21 100.00
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6. retro_pabe_1978 71.79 100.00
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7. retro_pabe_2108 81.68 77.08
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8. retro_pabe_2189 76.17 53.70
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9. retro_pabe_3446 83.90 66.67
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Download FASTA sequences of all ENSPPYG00000010935 retrocopies