RetrogeneDB ID: | retro_rnor_839 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 11:79850627..79851428(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ahcy | ||
Ensembl ID: | ENSRNOG00000017777 | ||
Aliases: | None | ||
Description: | Adenosylhomocysteinase [Source:UniProtKB/Swiss-Prot;Acc:P10760] |
Percent Identity: | 77.29 % |
Parental protein coverage: | 62.73 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MADKLPYKVADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIETLVAL |
M.DKLP..V.D.GLAAWG.KALD.AENEMPGLM.MREMYSASKPLKGARI.GCLHMTVET.VLIE.LV.L | |
Retrocopy | MSDKLP**VTDTGLAAWGQKALDVAENEMPGLMHMREMYSASKPLKGARIDGCLHMTVET-VLIEALVTL |
Parental | GAEVRWSSCNIFST-QDHAAAAIAKAGIPVFAWKGETDEEYLWCIEQTLHFKDG-PLNMILDDGGDLTNL |
.AEV.WSSC........HAAAAIAKAGIPVFAWKGETDEEYL.C.EQ.L.FKDG.PLNMILDDG.DLT.L | |
Retrocopy | DAEVQWSSCTFPGA<TSHAAAAIAKAGIPVFAWKGETDEEYL*CTEQMLYFKDG>PLNMILDDGDDLTSL |
Parental | IHTKHPQLLSGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATD |
I.TK.PQLLSGI.GISEETTTGVHNLYK.MAN..LKVP.INVNDS.TKS.FDNLYG.RESLID.IK..TD | |
Retrocopy | INTKYPQLLSGI*GISEETTTGVHNLYKTMANRLLKVPTINVNDSFTKSMFDNLYGGRESLIDSIKQLTD |
Parental | VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACKEGNI |
.MI.GKVAVVAGYGDV.K.CAQ.LRGFGARVIITEI.P..........YEVTTM.EACKE... | |
Retrocopy | -MIVGKVAVVAGYGDVIKSCAQVLRGFGARVIITEINPTASCHGGL--YEVTTMHEACKEAHL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 31 .78 RPM |
SRP017611_kidney | 0 .00 RPM | 228 .82 RPM |
SRP017611_liver | 0 .00 RPM | 707 .88 RPM |