Parental gene:

AHCY, ENSSSCG00000007278

Aliases:None
Description:Sus scrofa adenosylhomocysteinase (AHCY), mRNA. [Source:RefSeq mRNA;Acc:NM_001011727]
Organism:Pig (Sus scrofa)
Coordinates:17:42693944..42706680(-)


>ENSSSCG00000007278
GCTGACATCAGCCTGGCCGCCTGGGGACGCAAGGCCCTGGACCTCGCAGAGAATGAGATGCCAGGCCTGATGCGCATGCG
GGAGATGTATTCCGCCTCCAAGCCACTGAAAGGCGCCCGTATTGCCGGCTGCCTGCACATGACCGTGGAGACAGCTGTAC
TCATTGAGACCCTCGTCGCCCTGGGTGCTGAGGTGCGGTGGTCCAGCTGCAACATTTTCTCTACTCAGGACCATGCAGCA
GCTGCCATTGCCAAGGCTGGCATTCCAGTGTATGCCTGGAAGGGTGAAACGGACGAGGAGTATCTGTGGTGCATTGAGCA
GACACTGTACTTCAAGGATGGGCCCCTCAACATGATCCTGGATGATGGTGGTGACCTTACCAACCTCGTCCACACCAAGT
ACCCAGAGCTCCTGTCAGGCATCCGAGGCATCTCTGAAGAGACCACAACGGGAGTCCACAACCTGTACAAGATGAAGGCC
AACGGGATCCTGAAGGTGCCTGCCATCAACGTTAATGACTCTGTCACCAAGAGCAAGTTTGACAACCTCTATGGCTGCCG
GGAGTCCCTCATAGATGGCATCAAGCGGGCCACAGACGTGATGATTGCGGGCAAGGTGGCAGTGGTAGCGGGCTATGGCG
ACGTAGGCAAGGGCTGTGCCCAGGCCCTGAGGGGTTTCGGGGCCCGCGTCATCATCACGGAGATCGACCCCATCAACGCA
CTTCAGGCTGCCATGGAGGGCTATGAGGTGACCACCATGGATGAGGCCTGTCAGGAGGGCAACATCTTTGTCACCACCAC
GGGCTGTATCGACATCATCCTCGGCCGGCACTTTGAGCAGATGAAAGATGACGCCATCGTGTGTAACATCGGACACTTTG
ACGTGGAGATCGATGTCAAGTGGCTGAACGAGAACGCAGTGGAGAAGGTGAACATCAAGCCCCAGGTGGACCGCTACTTG
TTGAAGAATGGGCACCGCATCATCCTGCTGGCCGAGGGCCGGCTAGTCAACCTAGGCTGTGCCATGGGCCACCCCAGCTT
CGTGATGAGCAACTCCTTCACCAACCAGGTGTTGGCACAGATTGAACTGTGGACCCACCCAGACAAGTACCCTGTCGGGG
TCCACTTCCTGCCCAAGAAGCTGGATGAAGCAGTGGCTGAAGCCCACCTGGGCAAGCTGAACGTGAAGCTGACCAAGCTG
ACTGAGAAGCAGGCCCAGTACCTGGGCATGTCTCGTGAGGGCCCCTTCAAGCCTGATCATTACCGCTATTGA

Library Parental gene expression (RPM)
SRP014902_placenta 22 .43 RPM
SRP014902_testis 107 .07 RPM
SRP018288_heart 34 .89 RPM
SRP018288_kidney 147 .46 RPM
SRP018288_liver 278 .24 RPM
SRP018288_lung 45 .92 RPM
SRP018856_adipose 37 .99 RPM
SRP035408_brain 55 .17 RPM
SRP035408_liver 220 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018101 ortholog_one2one 1 retrogene
retro_btau_1140,
Canis familiaris ENSCAFG00000007504 ortholog_one2one 2 retrogenes
retro_cfam_1486, retro_cfam_552,
Callithrix jacchus ENSCJAG00000018303 possible_ortholog 7 retrogenes
retro_cjac_1028, retro_cjac_1248, retro_cjac_1806, retro_cjac_2132, retro_cjac_2839, retro_cjac_3287, retro_cjac_480,
Echinops telfairi ENSETEG00000002576 ortholog_one2many 1 retrogene
retro_etel_444,
Homo sapiens ENSG00000101444 possible_ortholog 6 retrogenes
retro_hsap_1496, retro_hsap_2325, retro_hsap_2365, retro_hsap_4213, retro_hsap_571, retro_hsap_803,
Gorilla gorilla ENSGGOG00000014694 possible_ortholog 5 retrogenes
retro_ggor_1148, retro_ggor_1795, retro_ggor_2822, retro_ggor_3087, retro_ggor_511,
Monodelphis domestica ENSMODG00000002753 ortholog_one2many 1 retrogene
retro_mdom_1974,
Mus musculus ENSMUSG00000027597 possible_ortholog 1 retrogene
retro_mmus_197,
Nomascus leucogenys ENSNLEG00000010041 ortholog_one2one 4 retrogenes
retro_nleu_1717, retro_nleu_2785, retro_nleu_40, retro_nleu_929,
Oryctolagus cuniculus ENSOCUG00000008592 possible_ortholog 1 retrogene
retro_ocun_1886,
Otolemur garnettii ENSOGAG00000016787 possible_ortholog 3 retrogenes
retro_ogar_3223, retro_ogar_3401, retro_ogar_3402,
Pongo abelii ENSPPYG00000010935 possible_ortholog 9 retrogenes
retro_pabe_1247, retro_pabe_1978, retro_pabe_2108, retro_pabe_2189, retro_pabe_3446, retro_pabe_647, retro_pabe_658, retro_pabe_665, retro_pabe_718,
Pan troglodytes ENSPTRG00000013414 possible_ortholog 7 retrogenes
retro_ptro_1015, retro_ptro_1698, retro_ptro_1730, retro_ptro_2860, retro_ptro_3011, retro_ptro_559, retro_ptro_771,
Rattus norvegicus ENSRNOG00000017777 possible_ortholog 7 retrogenes
retro_rnor_1142, retro_rnor_1820, retro_rnor_1903, retro_rnor_2120, retro_rnor_569, retro_rnor_647, retro_rnor_839,
Tarsius syrichta ENSTSYG00000007163 possible_ortholog 3 retrogenes
retro_tsyr_1178, retro_tsyr_1529, retro_tsyr_1582,
Tursiops truncatus ENSTTRG00000003632 possible_ortholog 1 retrogene
retro_ttru_1666,
Xenopus tropicalis ENSXETG00000019486 ortholog_one2many 1 retrogene
retro_xtro_62,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_119 70.20 59.10
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSSSCG00000007278 retrocopies