RetrogeneDB ID: | retro_pvam_1282 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_5505:100942..101529(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NAP1L1 | ||
Ensembl ID: | ENSPVAG00000016032 | ||
Aliases: | None | ||
Description: | nucleosome assembly protein 1-like 1 [Source:HGNC Symbol;Acc:7637] |
Percent Identity: | 65.17 % |
Parental protein coverage: | 50.26 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | EHDEPIL-KHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSE-PDDSDPFSFDGPEI-M |
EHDEPIL.KHLK.IKVKFSDAGQ..SF.LEFHFE.NEYF.N..LTK..R.R.....D...FS.DGPEI.M | |
Retrocopy | EHDEPIL<KHLKTIKVKFSDAGQSISFFLEFHFEHNEYFINQMLTKISRGRGQ>TNDFVHFSSDGPEI>M |
Parental | GCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFF-APPEVPESGDLDDDAEAILAA |
GCTGCQIDWKKGKNVT.KT..K.QKHK...TV.TVTKTVSN..F..FF.A.P.VPE.GDLDD.AEAILAA | |
Retrocopy | GCTGCQIDWKKGKNVT*KT-TKQQKHKRHETVHTVTKTVSN-NFL*FF>ASP*VPECGDLDDAAEAILAA |
Parental | DFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEEGEEE-DEENDPDYDSKKDQ |
DFE.GHFL.ERIIPRSVLYFTG.A..........EG.E..EE.....D...D......K.Q | |
Retrocopy | DFETGHFLHERIIPRSVLYFTGDAXXXXXXXXXXEGGEGNEENDPDYDSKKDQNPTECKQQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020908 | 8 retrocopies | |
Callithrix jacchus | ENSCJAG00000001115 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003883 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000013702 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000015583 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000020456 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000017474 | 1 retrocopy | |
Mus musculus | ENSMUSG00000058799 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010319 | 4 retrocopies | |
Pteropus vampyrus | ENSPVAG00000009190 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000016032 | 2 retrocopies |
retro_pvam_1282 , retro_pvam_306,
|
Rattus norvegicus | ENSRNOG00000003890 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003046 | 2 retrocopies |