RetrogeneDB ID: | retro_rnor_568 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:22625369..22626374(-) | ||
Located in intron of: | ENSRNOG00000013202 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ccnb1 | ||
Ensembl ID: | ENSRNOG00000018635 | ||
Aliases: | None | ||
Description: | G2/mitotic-specific cyclin-B1 [Source:UniProtKB/Swiss-Prot;Acc:P30277] |
Percent Identity: | 55.62 % |
Parental protein coverage: | 79.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KVPVCEPEVELDEPEPEPVMEVKH-SPEPILVDTPSPSPMETSGCAPAEEYLCQAFSDVILA-VSDVDAD |
KVPV...........P.P...VK....E......P.P.P...S.....EE.LCQAFSD..L....D.D.. | |
Retrocopy | KVPVQPTKAINASKQPKPTASVKPVQMETLAPKDPLPAPEDVS---MKEESLCQAFSDALLCKIEDIDNE |
Parental | DGGDPNLCSEYVKDIYAYLRQLEEEQSVRPKYLLGREVTGNMRAILIDWLIQVQMKFRLLQETMYMTVSI |
DG..P.LCS.YVKDIY.YLRQLE..QS..P..L.GR...G.MRAIL.DWL.QV..KFRLLQET.YM...I | |
Retrocopy | DGENPQLCSDYVKDIYQYLRQLEALQSINPHFLDGRDINGRMRAILVDWLVQVHSKFRLLQETLYMCIAI |
Parental | IDRFMQDSCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTNNTYTKHQIRQMEMKILRVLNFSLGR |
.DRF.Q...V..K.LQLVG.TA...ASKYEEM..P.I.DF...T.N.YT..QIR.ME..IL..L.F.LGR | |
Retrocopy | MDRFLQAQPVCRKKLQLVGITALLLASKYEEMFSPNIEDFVYITDNAYTSSQIREMETLILKELKFELGR |
Parental | PLPLHFLRRASKIGEVDVEQHTLAKYLMELSMLDYDMVHFAPSQIAAGAFCLALKILDNGEWTPTLQHYL |
PLPLHFLRRASK.GEVDVEQHTLAKYLMEL...DYDMVH..PSQ.AA.A.CL..K.L..G.W....Q.Y. | |
Retrocopy | PLPLHFLRRASKAGEVDVEQHTLAKYLMELTLVDYDMVHYHPSQVAAAASCLSQKVLGQGKWNLKQQYYT |
Parental | SHTEESLLPVMQHLAKNIVMVNRGLTKHMTIKNKYATSKHAKISTLAQLNCTLVQNLS |
...E...L.VMQH.AKN.V.VN..LTK....KN.YA.S...KIST..QLN......L. | |
Retrocopy | GYMESEILEVMQHMAKNVVKVNENLTKFIAVKN*YASSRLLKISTIPQLNSRTIKDLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .29 RPM | 1 .87 RPM |
SRP017611_kidney | 0 .28 RPM | 1 .19 RPM |
SRP017611_liver | 0 .00 RPM | 0 .20 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000007705 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016075 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000014629 | 1 retrocopy | |
Felis catus | ENSFCAG00000001572 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014648 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041431 | 5 retrocopies | |
Procavia capensis | ENSPCAG00000002451 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018635 | 2 retrocopies |
retro_rnor_568 , retro_rnor_814,
|
Sarcophilus harrisii | ENSSHAG00000007685 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011817 | 4 retrocopies |