RetrogeneDB ID: | retro_mmus_2508 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:118942062..118943352(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000084133 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ccnb1 | ||
Ensembl ID: | ENSMUSG00000041431 | ||
Aliases: | Ccnb1, Ccnb1-rs1, Ccnb1-rs13, CycB1, Cycb-4, Cycb-5, Cycb1-rs1 | ||
Description: | cyclin B1 [Source:MGI Symbol;Acc:MGI:88302] |
Percent Identity: | 96.76 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MALRVTRNTKINAENKAKVSMAGAKRVPVTVTAASKPGLRPRTALGDIGNKVSEELQARVPLKREAKTLG |
MALRVTRNTKIN.ENKA.VSMAGAKRVPVTVTAASKPG.RPRTALGDIGNKVSEELQARVPLKREAKTLG | |
Retrocopy | MALRVTRNTKINTENKAEVSMAGAKRVPVTVTAASKPGPRPRTALGDIGNKVSEELQARVPLKREAKTLG |
Parental | TGKGTVKALPKPVEKVPVCEPEVELAEPEPEPELEHVREEKLSPEPILVDNPSPSPMETSGCAPAEEYLC |
TGKGTVKALPKPVEKVPVCEP.VELAEPEPEPELEHVREEKLSPEPILVDNPSPSPMETSGCAPAEEYLC | |
Retrocopy | TGKGTVKALPKPVEKVPVCEPGVELAEPEPEPELEHVREEKLSPEPILVDNPSPSPMETSGCAPAEEYLC |
Parental | QAFSDVILAVSDVDADDGADPNLCSEYVKDIYAYLRQLEEEQSVRPKYLQGREVTGNMRAILIDWLIQVQ |
QAFSDVILAVSDVDADDGADPNLCSEYVKDIYAYLRQLEEEQSVRPKYLQGREVTGNMR.ILIDWLIQVQ | |
Retrocopy | QAFSDVILAVSDVDADDGADPNLCSEYVKDIYAYLRQLEEEQSVRPKYLQGREVTGNMRDILIDWLIQVQ |
Parental | MKFRLLQETMYMTVSIIDRFMQNSCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTNNTYTKHQIR |
MKFRLLQETMYMTVSIIDRFMQNSCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTNNTYTKHQIR | |
Retrocopy | MKFRLLQETMYMTVSIIDRFMQNSCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTNNTYTKHQIR |
Parental | QMEMKILRVLNFSLGRPLPLHFLRRASKVGEVDVEQHTLAKYLMELSMLDYDMVHFAPSQIAAGAFCLAL |
QMEMKILRVLNFSLGRPLPLHFLRRASKVGEVDVEQHTLAKYLMELSMLDYDMVHF.PSQIAAGAFCLAL | |
Retrocopy | QMEMKILRVLNFSLGRPLPLHFLRRASKVGEVDVEQHTLAKYLMELSMLDYDMVHFVPSQIAAGAFCLAL |
Parental | KILDNGEWT-PTLQHYLSYSEDSLLPVMQHLAKNVVMVNCGLTKHMTVKN-KYAASKHAKISTLAQLNCT |
..LDNGEWT..TLQHYL.Y.EDSLLPVMQHLAKN.VMVNCGLTKHMTVKN.KYAASKHAKISTLAQLNCT | |
Retrocopy | ESLDNGEWT<TTLQHYLPYTEDSLLPVMQHLAKNRVMVNCGLTKHMTVKN>KYAASKHAKISTLAQLNCT |
Parental | LVQNLSKAVTKA |
LVQNLSKAVTKA | |
Retrocopy | LVQNLSKAVTKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 0 .56 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .09 RPM |
SRP007412_heart | 0 .00 RPM | 0 .28 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .40 RPM |
SRP007412_liver | 0 .00 RPM | 0 .11 RPM |
SRP007412_testis | 0 .82 RPM | 28 .54 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000007705 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016075 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000014629 | 1 retrocopy | |
Felis catus | ENSFCAG00000001572 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014648 | 1 retrocopy | |
Mus musculus | ENSMUSG00000034165 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041431 | 5 retrocopies | |
Procavia capensis | ENSPCAG00000002451 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018635 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000007685 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011817 | 4 retrocopies |