RetrogeneDB ID: | retro_mmus_2615 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:143438372..143439360(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ccnb1 | ||
Ensembl ID: | ENSMUSG00000041431 | ||
Aliases: | Ccnb1, Ccnb1-rs1, Ccnb1-rs13, CycB1, Cycb-4, Cycb-5, Cycb1-rs1 | ||
Description: | cyclin B1 [Source:MGI Symbol;Acc:MGI:88302] |
Percent Identity: | 90.42 % |
Parental protein coverage: | 76.98 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MALRVTR-NTKINAENKAKVSMAGAKRVPVTVTAASKPGLRPRTALGDIGNKVSEELQARVPLKREAK-T |
MALRV...NTK.N.ENKAKVSMAGAKRVPVTVTAASKPGLRPRTALGDIGNKVSEELQARVPLKREAK.T | |
Retrocopy | MALRVMG<NTKTNTENKAKVSMAGAKRVPVTVTAASKPGLRPRTALGDIGNKVSEELQARVPLKREAK>T |
Parental | LGTGKGTVKALPKPVEKVPVCEPEVELAEPEPEPELEHVREE-KLSPEPILVDNPSPSPMETSGCAPAEE |
LGTGKGTVKALPKPVEKVPVCEPEVELAEPEPE..LEHVRE..KLSPEPILVDNPSPSPMETSGCAPA.E | |
Retrocopy | LGTGKGTVKALPKPVEKVPVCEPEVELAEPEPE--LEHVRED>KLSPEPILVDNPSPSPMETSGCAPAGE |
Parental | YLCQAFSDVILAVSDVDADDGADPNLCSEYVKDIYAYLRQLEEEQSVRPKYLQGREVTGNMRAILIDWLI |
YLCQAFSDVILAVSD..A.DGADPNLCSEY..DIYAY.RQLEEEQSVRPKYLQG.EVTGNMRAIL.DWLI | |
Retrocopy | YLCQAFSDVILAVSDIEAEDGADPNLCSEYANDIYAYFRQLEEEQSVRPKYLQGGEVTGNMRAILFDWLI |
Parental | QVQMKFRLLQETMYMTVSIIDRFMQNSCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTNNTYTKH |
QVQMKFRLLQETMYMTVS.IDRFMQNSCVPKK.LQLVGVTAMFIASKYEEMYPPE.GDFAFV.NN.YTKH | |
Retrocopy | QVQMKFRLLQETMYMTVSMIDRFMQNSCVPKKVLQLVGVTAMFIASKYEEMYPPETGDFAFVINNMYTKH |
Parental | QIRQMEMKILRVLNFSLGRPLPLHFLRRASKVGEVDVEQHTLAKYLMELSMLDY |
QIRQMEMKILRVLNFSLGRPLPLHFLRRASK.GEVD.EQHTLAKYLM...M... | |
Retrocopy | QIRQMEMKILRVLNFSLGRPLPLHFLRRASKIGEVDAEQHTLAKYLMDYDMVHF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 0 .56 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .09 RPM |
SRP007412_heart | 0 .00 RPM | 0 .28 RPM |
SRP007412_kidney | 0 .02 RPM | 0 .40 RPM |
SRP007412_liver | 0 .00 RPM | 0 .11 RPM |
SRP007412_testis | 0 .23 RPM | 28 .54 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000007705 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016075 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000014629 | 1 retrocopy | |
Felis catus | ENSFCAG00000001572 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014648 | 1 retrocopy | |
Mus musculus | ENSMUSG00000034165 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041431 | 5 retrocopies | |
Procavia capensis | ENSPCAG00000002451 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018635 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000007685 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011817 | 4 retrocopies |