RetrogeneDB ID:

retro_sara_476

Retrocopy
location
Organism:Shrew (Sorex araneus)
Coordinates:scaffold_220609:8045..8565(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FTL
Ensembl ID:ENSSARG00000011741
Aliases:None
Description:ferritin, light polypeptide [Source:HGNC Symbol;Acc:3999]


Retrocopy-Parental alignment summary:






>retro_sara_476
ATGAGCTCCCAGATCGTCGGAATATGCTCCGACGTGGGGCCGCCGGCCAATCGCCTGGTGACCTGCATCTGCGGGCCTCC
TACACTACCTCTCTCTGGGCTTCTATTTCAGCCGCGACGACGTGGCTGGGGAGGGCGTGGGCCGCTTCTCCCGCGAGTTG
TCGGAGAGGAAGCGCCAGGGCTCCGAACGCCCCCTGAAGATGCAAAGCCAGCGTGGTGGCCGCGCCCTCTTCCAGCACGT
GCAGAAGCTGTACGGGATGAGTGGGGTAAAAACGCCGGAGGCCACGGAAGCCGCCACGGTCCTGGAGGAGAATCTCAACC
AGGCCCTGTTGGATCTGCATGCCTGGGGTTCCACCCGCTCGGATCCCCATCTCTGTGACTTCCTGGAGAGCCATTTCCTG
GAAGAAGAGGTAAAACTGATCAAGAAGATGGGCGACCACCTGACCAACCTCCGCAGACTAGGAAGCCCCCAGCCTGGGCT
GGGCGAGTATGTCTTCGAGAGGCTGACCCTCAAGCACGAC

ORF - retro_sara_476 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.01 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalMSSQIRQNYSSDVEAAVNRLV-NLHLRASYT-YLSLGFYFSRDDVALEGVGHFFRELSEEKREGAERLLK
MSSQI.....SDV....NRLV..LHLRASYT.YLSLGFYFSRDDVA.EGVG.F.RELSE.KR.G.ER.LK
RetrocopyMSSQI-VGICSDVGPPANRLV<DLHLRASYT<YLSLGFYFSRDDVAGEGVGRFSRELSERKRQGSERPLK
ParentalMQNQRGGRALFQDVQK-PSQDEWGK-TLEAMEAALVLEKNLNQALLDLHALGSTRSDPHLCDFLESHFLD
MQ.QRGGRALFQ.VQK....DEWGK.T.EA.EAA.VLE.NLNQALLDLHA.GSTRSDPHLCDFLESHFL.
RetrocopyMQSQRGGRALFQHVQK<AVRDEWGK>TPEATEAATVLEENLNQALLDLHAWGSTRSDPHLCDFLESHFLE
ParentalEEVKLIKKMGDHLTNLRRLASPQPGLGEYLFERLTLKHD
EEVKLIKKMGDHLTNLRRL.SPQPGLGEY.FERLTLKHD
RetrocopyEEVKLIKKMGDHLTNLRRLGSPQPGLGEYVFERLTLKHD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Sorex araneus was not studied using RNA-Seq expression data.
Sorex araneus was not studied using ChIP-Seq data.
Sorex araneus was not studied using EST data.
Sorex araneus was not studied using FANTOM5 data.
retro_sara_476 was not experimentally validated.

Retrocopy orthology:
Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 27 parental genes, and 442 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG0000001334333 retrocopies
Canis familiaris ENSCAFG000000038611 retrocopy
Callithrix jacchus ENSCJAG0000000025013 retrocopies
Cavia porcellus ENSCPOG000000205581 retrocopy
Dasypus novemcinctus ENSDNOG000000024559 retrocopies
Dasypus novemcinctus ENSDNOG000000041265 retrocopies
Dasypus novemcinctus ENSDNOG0000000557736 retrocopies
Dasypus novemcinctus ENSDNOG000000078482 retrocopies
Dasypus novemcinctus ENSDNOG000000166838 retrocopies
Dipodomys ordii ENSDORG000000155505 retrocopies
Felis catus ENSFCAG0000000334837 retrocopies
Gorilla gorilla ENSGGOG000000119999 retrocopies
Loxodonta africana ENSLAFG0000003124811 retrocopies
Microcebus murinus ENSMICG000000018617 retrocopies
Macaca mulatta ENSMMUG000000039099 retrocopies
Mustela putorius furoENSMPUG0000000330429 retrocopies
Mus musculus ENSMUSG000000507081 retrocopy
Oryctolagus cuniculus ENSOCUG000000000146 retrocopies
Pan troglodytes ENSPTRG0000001126811 retrocopies
Pteropus vampyrus ENSPVAG0000000957025 retrocopies
Rattus norvegicus ENSRNOG000000208437 retrocopies
Sorex araneus ENSSARG00000011741 12 retrocopies
Sus scrofa ENSSSCG0000000315333 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000206397 retrocopies
Tarsius syrichta ENSTSYG0000001398856 retrocopies
Tursiops truncatus ENSTTRG0000000125266 retrocopies
Vicugna pacos ENSVPAG000000055093 retrocopies



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