RetrogeneDB ID: | retro_sara_575 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_235186:4767..5142(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSARG00000005943 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP1S2 | ||
Ensembl ID: | ENSSARG00000000117 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 1, sigma 2 subunit [Source:HGNC Symbol;Acc:560] |
Percent Identity: | 83.2 % |
Parental protein coverage: | 80.13 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAI |
M.FMLLFSRQGKLRLQKWY...SDKE.KK..REL.Q.VLA.KPKMCSFLEWRDLK.VYKRYASLYFCC.I | |
Retrocopy | MRFMLLFSRQGKLRLQKWYLATSDKEHKKMVRELIQVVLACKPKMCSFLEWRDLKVVYKRYASLYFCCTI |
Parental | EDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQET |
E.QDNELITLE.IHRYVELL.KYFGSVCELDIIFNF.KAYFILDEFL.GG....T | |
Retrocopy | EGQDNELITLELIHRYVELLNKYFGSVCELDIIFNFKKAYFILDEFLMGGPTCRT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020420 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004393 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013888 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017197 | 7 retrocopies | |
Otolemur garnettii | ENSOGAG00000011342 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000000733 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010218 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000117 | 1 retrocopy |
retro_sara_575 ,
|
Sarcophilus harrisii | ENSSHAG00000013119 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000012142 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008517 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008834 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000005290 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000007642 | 1 retrocopy |