RetrogeneDB ID: | retro_shar_651 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL856933.1:1641219..1641537(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP1S2 | ||
Ensembl ID: | ENSSHAG00000013119 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 1, sigma 2 subunit [Source:HGNC Symbol;Acc:560] |
Percent Identity: | 51.85 % |
Parental protein coverage: | 67.09 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQ-DNELITLEIIHRYVELLDKY |
KEKK..........LA.K.K..S.L.W.....V.KR..SLYFCC.I.....NE..TLEII...V.LL.KY | |
Retrocopy | KEKKNHKEICLNGFLAHKFKIRSILKW*GFQTVNKRFVSLYFCCTINIK<NNEPKTLEIINPHVVLLNKY |
Parental | FGSVCELD-IIFNFEKAYFILDEFLLGGEVQETSKKNV |
FG..CE.D.II.NFEK...IL.E.LL...V.ET.KKNV | |
Retrocopy | FGNACEHD>IILNFEKMCYILNELLLEEAVWETPKKNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020420 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004393 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013888 | 1 retrocopy | |
Homo sapiens | ENSG00000182287 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014055 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017197 | 7 retrocopies | |
Otolemur garnettii | ENSOGAG00000011342 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000000733 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010218 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000117 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000010973 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013119 | 2 retrocopies |
retro_shar_651 , retro_shar_690,
|
Sus scrofa | ENSSSCG00000012142 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008517 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008834 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000005290 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000007642 | 1 retrocopy |