Parental gene:

AP1S2, ENSSSCG00000012142

Aliases:None
Description:adaptor-related protein complex 1, sigma 2 subunit [Source:HGNC Symbol;Acc:560]
Organism:Pig (Sus scrofa)
Coordinates:X:13312012..13341924(-)


>ENSSSCG00000012142
ATGCAGTTTATGTTGCTTTTTAGTCGTCAGGGAAAGCTACGACTGCAGAAATGGTATGTCCCATTATCAGACAAAGAGAA
GAAAAAGATCACAAGAGAACTTGTTCAAACCGTTTTAGCACGGAAACCTAAAATGTGCAGCTTTCTTGAGTGGCGAGATC
TGAAGATTGTTTACAAAAGATATGCCAGTCTGTATTTTTGCTGTGCTATTGAGGATCAGGACAATGAACTAATTACCCTG
GAAATAATTCATCGTTATGTGGAATTACTTGACAAGTATTTTGGCAGTGTGTGTGAACTTGATATCATCTTTAATTTTGA
GAAGGCTTATTTTATTTTGGATGAGTTTCTTTTGGGCGGAGAAGTTCAGGAAACATCCAAGAAAAATGTTCTTAAAGCAA
TTGAGCAGGCCGATCTACTGCAGGAGGAAGCTGAAACCCCACGTAGTGTTCTTGAAGAAATTGGACTGACATAA

Library Parental gene expression (RPM)
SRP014902_placenta 20 .18 RPM
SRP014902_testis 25 .32 RPM
SRP018856_adipose 5 .62 RPM
SRP018288_kidney 8 .96 RPM
SRP018288_lung 17 .21 RPM
SRP018288_liver 3 .84 RPM
SRP018288_heart 79 .45 RPM
SRP035408_liver 6 .69 RPM
SRP035408_brain 33 .06 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020420 ortholog_one2one 1 retrogene
retro_btau_1308,
Callithrix jacchus ENSCJAG00000004393 possible_ortholog 1 retrogene
retro_cjac_2312,
Dasypus novemcinctus ENSDNOG00000013888 ortholog_one2one 1 retrogene
retro_dnov_1786,
Monodelphis domestica ENSMODG00000017197 ortholog_one2one 7 retrogenes
retro_mdom_1189, retro_mdom_1329, retro_mdom_1441, retro_mdom_1470, retro_mdom_1616, retro_mdom_1987, retro_mdom_903,
Otolemur garnettii ENSOGAG00000011342 possible_ortholog 3 retrogenes
retro_ogar_2038, retro_ogar_265, retro_ogar_3453,
Procavia capensis ENSPCAG00000000733 ortholog_one2one 1 retrogene
retro_pcap_386,
Pteropus vampyrus ENSPVAG00000010218 ortholog_one2one 1 retrogene
retro_pvam_783,
Sorex araneus ENSSARG00000000117 ortholog_one2one 1 retrogene
retro_sara_575,
Sarcophilus harrisii ENSSHAG00000013119 ortholog_one2one 2 retrogenes
retro_shar_651, retro_shar_690,
Ictidomys tridecemlineatus ENSSTOG00000008517 ortholog_one2many 1 retrogene
retro_itri_131,
Tupaia belangeri ENSTBEG00000008834 ortholog_one2one 2 retrogenes
retro_tbel_2173, retro_tbel_4575,
Tarsius syrichta ENSTSYG00000005290 ortholog_one2one 2 retrogenes
retro_tsyr_1953, retro_tsyr_854,
Vicugna pacos ENSVPAG00000007642 ortholog_one2one 1 retrogene
retro_vpac_596,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_998 92.86 62.42
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Download FASTA sequences of all ENSSSCG00000012142 retrocopies