RetrogeneDB ID: | retro_sscr_998 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 8:71362324..71362618(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AP1S2 | ||
Ensembl ID: | ENSSSCG00000012142 | ||
Aliases: | None | ||
Description: | adaptor-related protein complex 1, sigma 2 subunit [Source:HGNC Symbol;Acc:560] |
Percent Identity: | 92.86 % |
Parental protein coverage: | 62.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKN |
RYASLYFCCAIEDQDNELITLEIIH.YVELLDKYF..VCELDIIFNFEK.YFILDEFLLG.EVQETSKKN | |
Retrocopy | RYASLYFCCAIEDQDNELITLEIIHHYVELLDKYFDGVCELDIIFNFEKDYFILDEFLLGEEVQETSKKN |
Parental | VLKAIEQADLLQEEAETPRSVLEEIGLT |
VLKA.EQADLLQEE.ETPRSVLEEIGLT | |
Retrocopy | VLKATEQADLLQEEVETPRSVLEEIGLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 20 .18 RPM |
SRP014902_testis | 0 .42 RPM | 25 .32 RPM |
SRP018288_heart | 0 .03 RPM | 79 .45 RPM |
SRP018288_kidney | 0 .00 RPM | 8 .96 RPM |
SRP018288_liver | 0 .16 RPM | 3 .84 RPM |
SRP018288_lung | 0 .00 RPM | 17 .21 RPM |
SRP018856_adipose | 0 .03 RPM | 5 .62 RPM |
SRP035408_brain | 0 .00 RPM | 33 .06 RPM |
SRP035408_liver | 0 .00 RPM | 6 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020420 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004393 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013888 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017197 | 7 retrocopies | |
Otolemur garnettii | ENSOGAG00000011342 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000000733 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000010218 | 1 retrocopy | |
Sorex araneus | ENSSARG00000000117 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013119 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000012142 | 1 retrocopy |
retro_sscr_998 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000008517 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008834 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000005290 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000007642 | 1 retrocopy |