RetrogeneDB ID: | retro_sscr_100 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 1:18889839..18890197(+) | ||
Located in intron of: | ENSSSCG00000004110 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL30 | ||
Ensembl ID: | ENSSSCG00000006081 | ||
Aliases: | None | ||
Description: | ribosomal protein L30 [Source:HGNC Symbol;Acc:10333] |
Percent Identity: | 60.98 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MVAAKKTK--KSLES---INSRLQLVM-KSGKYVLGYKQTLKMIRQGK-AKLVILANNCPALRKSEIEYY |
.V...KTK..KS..S...INSR.QL.M.K.GK..L...Q.LKM.R.GK...LVIL.NNC.ALRKS..EYY | |
Retrocopy | VVVTNKTKLPKSINSRLQINSRFQLLM>KTGKHMLRHMQVLKMMR*GK<SELVILTNNCSALRKSVREYY |
Parental | AMLAKTGVH-HYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK |
AMLAK.....H.S.NN.ELG.A..KY.R.C.LAI.DPGDSDIIR.M..QTGEK | |
Retrocopy | AMLAKSSIY>H-SSNNAELGIAYRKYHRICKLAITDPGDSDIIRCMLKQTGEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 253 .65 RPM |
SRP014902_testis | 0 .00 RPM | 430 .85 RPM |
SRP018288_heart | 0 .03 RPM | 290 .46 RPM |
SRP018288_kidney | 0 .00 RPM | 324 .48 RPM |
SRP018288_liver | 0 .00 RPM | 330 .37 RPM |
SRP018288_lung | 0 .00 RPM | 87 .98 RPM |
SRP018856_adipose | 0 .00 RPM | 1248 .10 RPM |
SRP035408_brain | 0 .00 RPM | 97 .38 RPM |
SRP035408_liver | 0 .00 RPM | 85 .43 RPM |