RetrogeneDB ID:

retro_fcat_323

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:A2:48196790..48197133(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000002165
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_323
ATGGTGGCTATGAAGAAGATGAAAAAGTCAGTGCAGTTGATCAACCTAGGCTCCAACTCATTATGAAAAGTGGAAAGTAC
ACGCTGGTGTACAAGCAGACATTGGAAATGATCTGACGCGGCTAAGAAAACTGCTCATCTTGACCAACACCTGCCCAGCC
TTGAGGAAATCTGAAATAGAGTACTATGCCATGTTGGCCAAAACTGCTGTCCATCACTGCATTGACAATAATATTGAGTT
GGGCACAGCAGGGGGGTGGGGAGTACGTGTATGCACACTGGCTATCATTGATCCAGATGATTCTGATATCATTAGAAGCT
TGCCAGTACAGATTGGTGAAAAG

ORF - retro_fcat_323 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.5 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMVAAKKTKKSLESIN-SRLQLVMKSGKYVLGYKQTLKMIRHG-KAKLVILANNCPALRKSEIEYYAMLAK
MVA.KK.KKS...IN..RLQL.MKSGKY.L.YKQTL.MI..G...KL.IL.N.CPALRKSEIEYYAMLAK
RetrocopyMVAMKKMKKSVQLIN<PRLQLIMKSGKYTLVYKQTLEMI*RG<LRKLLILTNTCPALRKSEIEYYAMLAK
ParentalTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK
T.VHH...NNIELGTA.G...RVCTLAIIDP.DSDIIRS.P.Q.GEK
RetrocopyTAVHHCIDNNIELGTAGGWGVRVCTLAIIDPDDSDIIRSLPVQIGEK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 74 .03 RPM
SRP017611_kidney 0 .00 RPM 230 .75 RPM
SRP017611_liver 0 .00 RPM 118 .28 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_323 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_323 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 26 parental genes, and 205 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000160472 retrocopies
Ailuropoda melanoleuca ENSAMEG0000000060518 retrocopies
Bos taurus ENSBTAG000000162782 retrocopies
Callithrix jacchus ENSCJAG000000155494 retrocopies
Cavia porcellus ENSCPOG000000260304 retrocopies
Dasypus novemcinctus ENSDNOG0000001382812 retrocopies
Dipodomys ordii ENSDORG0000001238310 retrocopies
Equus caballus ENSECAG000000217057 retrocopies
Erinaceus europaeus ENSEEUG000000009649 retrocopies
Felis catus ENSFCAG00000002165 9 retrocopies
Homo sapiens ENSG000001564829 retrocopies
Gorilla gorilla ENSGGOG000000055029 retrocopies
Loxodonta africana ENSLAFG000000020772 retrocopies
Microcebus murinus ENSMICG000000046203 retrocopies
Myotis lucifugus ENSMLUG0000000363711 retrocopies
Macaca mulatta ENSMMUG0000002007312 retrocopies
Monodelphis domestica ENSMODG000000068041 retrocopy
Mus musculus ENSMUSG0000005860021 retrocopies
Oryctolagus cuniculus ENSOCUG000000173864 retrocopies
Ochotona princeps ENSOPRG000000076443 retrocopies
Pongo abelii ENSPPYG000000187744 retrocopies
Pan troglodytes ENSPTRG0000002045410 retrocopies
Pteropus vampyrus ENSPVAG000000144619 retrocopies
Rattus norvegicus ENSRNOG0000000597519 retrocopies
Sus scrofa ENSSSCG000000060816 retrocopies
Tursiops truncatus ENSTTRG000000160585 retrocopies



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