RetrogeneDB ID: | retro_acar_170 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343291.1:1613836..1614061(-) | ||
Located in intron of: | ENSACAG00000012126 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL30 | ||
Ensembl ID: | ENSACAG00000016047 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96. % |
Parental protein coverage: | 69.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPE |
GKAKLVILANNCPALRKSEIEYYAMLAKT.VHHYSGNNIELGTACGKYYRV.TLAIID.GDSDIIRSMPE | |
Retrocopy | GKAKLVILANNCPALRKSEIEYYAMLAKTDVHHYSGNNIELGTACGKYYRVGTLAIIDSGDSDIIRSMPE |
Parental | QTAEK |
QTAEK | |
Retrocopy | QTAEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .07 RPM | 1672 .11 RPM |
SRP009831_brain | 0 .09 RPM | 130 .37 RPM |
SRP009831_dewlap | 0 .25 RPM | 254 .51 RPM |
SRP009831_embryo | 0 .03 RPM | 479 .81 RPM |
SRP009831_heart | 0 .05 RPM | 225 .38 RPM |
SRP009831_liver | 0 .00 RPM | 221 .57 RPM |
SRP009831_lung | 0 .00 RPM | 146 .13 RPM |
SRP009831_ovary | 0 .35 RPM | 129 .76 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 85 .99 RPM |