RetrogeneDB ID: | retro_fcat_1872 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | JH408681.1:4089..4431(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000002165 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.21 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRHGKAKLVILANNCPALRKSEIE-YYAMLAKT |
MVA.KK.KKSLE..NSRLQL.MKSGKYV.G.K.TL.MIRHGK.KLVI.ANNCP.LRKSE....Y...AKT | |
Retrocopy | MVATKKMKKSLELMNSRLQLIMKSGKYVMG*KHTLNMIRHGKVKLVIFANNCPPLRKSETD<HYIIVAKT |
Parental | GVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPE-QTGEK |
GV.HY.GNNIEL.T.CGKYYRVC.LAI.DPGDSDIIRSM...QT.EK | |
Retrocopy | GV-HYNGNNIELDTVCGKYYRVCILAISDPGDSDIIRSMDS>QTNEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 74 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 230 .75 RPM |
SRP017611_liver | 0 .00 RPM | 118 .28 RPM |