RetrogeneDB ID: | retro_sscr_1188 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | X:34866004..34866472(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000012217 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSSCG00000009303 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 71.95 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MTNTK-GKRRGTRYMFSRPFRKHGVVPLATYMRIY-KKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVT |
MTNTK.GK..G.....SRPFRKHG.VPLA.Y..IY.KKG.I.DI.G.GTVQKGM.HKC.HGK.GRVYNVT | |
Retrocopy | MTNTK<GKEEG----HSRPFRKHGLVPLAAYTQIYSKKGNIADIQGTGTVQKGMSHKCFHGKSGRVYNVT |
Parental | QHAVGIVVNKQVKGKILAKR-INVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPRE |
QHA.G..VNKQ..G.ILA...INV..EHIKHSKS...FLK.VKENDQKKKEAKEKGTWVQLK.QPAP.RE | |
Retrocopy | QHATGTAVNKQAEGQILARA<INVPSEHIKHSKSQGNFLKHVKENDQKKKEAKEKGTWVQLKSQPAPLRE |
Parental | AHFVRTNGKEPELLEPIP-YEFMA |
A....T.GKEPELLEP.P..EF.A | |
Retrocopy | APLGKTKGKEPELLEPNP<HEFVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 78 .71 RPM |
SRP014902_testis | 0 .00 RPM | 260 .12 RPM |
SRP018288_heart | 0 .00 RPM | 401 .86 RPM |
SRP018288_kidney | 0 .00 RPM | 331 .87 RPM |
SRP018288_liver | 0 .00 RPM | 309 .27 RPM |
SRP018288_lung | 0 .00 RPM | 406 .69 RPM |
SRP018856_adipose | 0 .00 RPM | 620 .58 RPM |
SRP035408_brain | 0 .16 RPM | 438 .42 RPM |
SRP035408_liver | 0 .23 RPM | 389 .99 RPM |