RetrogeneDB ID: | retro_sscr_837 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 6:46585034..46585502(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSSCG00000009303 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 81.88 % |
Parental protein coverage: | 98.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQK-GMPHKCYHGK-TGRVYNVT |
MTNT.G.RR.TRYMFSRPFRKHG.VPLATY..IYKKGD.VD.KGMGTVQK.GM..K.YHGK.TGRVY.V. | |
Retrocopy | MTNTRGRRRDTRYMFSRPFRKHGAVPLATYI*IYKKGDTVDSKGMGTVQK<GMQCKSYHGK<TGRVYSVV |
Parental | QHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFL-KRVKENDQKKKEAKEKGTWVQLKRQPAPPRE |
QHAVGI.VNKQVKGKILAKRINV..EH..HSKSRDSFL...VKENDQ.KKEAKEKGTWV.LK.QP.P.RE | |
Retrocopy | QHAVGIAVNKQVKGKILAKRINVHMEHFRHSKSRDSFL<ECVKENDQRKKEAKEKGTWVLLKCQPPPLRE |
Parental | AHFVRTNGKEPELLEPIPYE |
AHFVRTNGKEPELLEPIPY. | |
Retrocopy | AHFVRTNGKEPELLEPIPYD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 78 .71 RPM |
SRP014902_testis | 0 .28 RPM | 260 .12 RPM |
SRP018288_heart | 0 .08 RPM | 401 .86 RPM |
SRP018288_kidney | 0 .10 RPM | 331 .87 RPM |
SRP018288_liver | 0 .00 RPM | 309 .27 RPM |
SRP018288_lung | 0 .00 RPM | 406 .69 RPM |
SRP018856_adipose | 0 .17 RPM | 620 .58 RPM |
SRP035408_brain | 0 .38 RPM | 438 .42 RPM |
SRP035408_liver | 0 .09 RPM | 389 .99 RPM |