RetrogeneDB ID: | retro_tsyr_2132 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_94116:2204..2536(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUSC2 | ||
Ensembl ID: | ENSTSYG00000010483 | ||
Aliases: | None | ||
Description: | tumor suppressor candidate 2 [Source:HGNC Symbol;Acc:17034] |
Percent Identity: | 91.96 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MGASGSKARGLWPFASAAGG-GNPEAAGAE-QALVRPRGRAVPPFVFTRRGSMFYDEDGDLAHEFYEETI |
MGASGSKARGLWPFASAAGG.GNPEAAGAE.QALV..RGRAVPPFVFTRRGSMFYDEDG.LAHEFYEET. | |
Retrocopy | MGASGSKARGLWPFASAAGG>GNPEAAGAE>QALVWARGRAVPPFVFTRRGSMFYDEDGGLAHEFYEETV |
Parental | VTKNGQKRAKLRRVHKNLIPQGIVKLDPPRIHVDFPVILYEV |
VTKNGQKRAKLRRV.KNLIPQGIVKLDPP.IHV.FPVILYEV | |
Retrocopy | VTKNGQKRAKLRRVPKNLIPQGIVKLDPPGIHVYFPVILYEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000007859 | 2 retrocopies | |
Felis catus | ENSFCAG00000031595 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002499 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008080 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000010483 | 2 retrocopies |
retro_tsyr_1922, retro_tsyr_2132 ,
|
Vicugna pacos | ENSVPAG00000007903 | 1 retrocopy |