RetrogeneDB ID: | retro_vpac_221 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_2975:1334999..1335235(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TUSC2 | ||
Ensembl ID: | ENSVPAG00000007903 | ||
Aliases: | None | ||
Description: | tumor suppressor candidate 2 [Source:HGNC Symbol;Acc:17034] |
Percent Identity: | 81.25 % |
Parental protein coverage: | 72.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGASGSKAR-GLWPFASAAGGGGPEAVVAEQALVRRQGRVVPPFVFTRRGXXXXXXDGDLAREFREETVV |
MGASGSKAR.G.WPF.SAAGGGGPEA.VAEQALVR..GRVVPPFVFTRRG......DGDLA.EF.EETVV | |
Retrocopy | MGASGSKAR<GVWPFGSAAGGGGPEAAVAEQALVRPRGRVVPPFVFTRRGSMFDDEDGDLAHEFYEETVV |
Parental | TKNGQQRAKL |
TKNGQ.RAKL | |
Retrocopy | TKNGQKRAKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000007859 | 2 retrocopies | |
Felis catus | ENSFCAG00000031595 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002499 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008080 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000010483 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000007903 | 1 retrocopy |
retro_vpac_221 ,
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