RetrogeneDB ID: | retro_tsyr_463 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_12264:29580..30254(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSTSYG00000013466 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 78.51 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LVKDMKIKSLEENYLFSLPIK-ESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHV |
LVKDMKIKSL.E..LF.LPI..ESEI.DFFLGA.LKDEVLKIM.VQKQT.AGQ.TR.K.FVA.GDYNGHV | |
Retrocopy | LVKDMKIKSLREICLFFLPIM<ESEITDFFLGATLKDEVLKIMTVQKQTCAGQWTRLKVFVATGDYNGHV |
Parental | GLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHNSPCKVTGRCGSVLVRLIPAPRGTGIVSA |
GLGV.CSKEVATAI.G.IILAKL.IVPV.R.YWGNKI.KP....CK.TG.C.SVLVRLIPAPRGTGI.SA | |
Retrocopy | GLGVTCSKEVATAI*GDIILAKLFIVPVWRDYWGNKISKP*IVLCKLTGHCSSVLVRLIPAPRGTGILSA |
Parental | P-VPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKT |
P..PKKLLMM.GI.DC.TSARGC.ATL.NFAKATFDA.SKTYSYL.PDLWKETVFTKSPYQE.T..L..T | |
Retrocopy | P<MPKKLLMMTGINDCCTSARGCIATLSNFAKATFDAFSKTYSYLSPDLWKETVFTKSPYQEITNYLART |
Parental | HTRVSMQRTQ-APAVSTT |
HTRVS.QRTQ..P...TT | |
Retrocopy | HTRVSVQRTQ>TPSMATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |