RetrogeneDB ID: | retro_fcat_1245 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:207580458..207580986(-) | ||
Located in intron of: | ENSFCAG00000008145 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSFCAG00000029191 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 63.48 % |
Parental protein coverage: | 59.04 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | GRGGRACRGLGFTSPHRRVG--GGRGRGRGRGRGARGGKAEDKEWMPVTKLGRLVKDMKIKSLEEIYLFS |
G.GG......GF.S.....G..GG...G.GRG.GA...KA...E..P.TKL..L.KD.K.KSLEEI...S | |
Retrocopy | GLGGHRVSLVGFGSAIGAWGHDGGWWLG*GRGHGACRDKAGNRERIPITKLSHLIKDVKVKSLEEISCSS |
Parental | LPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYN-GHVGLGVKCSKEVATAIRGA |
LPIKESE.IDFFLGASLK.EVLKI.PVQ.QT.AG...RFKAFVAI.DY..GHVG.GVK.S.EVATAI.G. | |
Retrocopy | LPIKESEVIDFFLGASLKNEVLKIIPVQQQTCAGPQARFKAFVAI*DYH>GHVGPGVKSSREVATAILGV |
Parental | IILAKL-SIVPVRRGYW-GNKIGKPHTVPCKVTGRCGS |
.ILAKL.S.VPV..G.W.GNKI.KPHTV.CK.TG..GS | |
Retrocopy | VILAKL>SSVPV*QGSW>GNKINKPHTVACKMTGHRGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 283 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 608 .66 RPM |
SRP017611_liver | 0 .00 RPM | 446 .62 RPM |