RetrogeneDB ID: | retro_fcat_1610 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D4:13078804..13079382(-) | ||
Located in intron of: | ENSFCAG00000000112 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS2 | ||
Ensembl ID: | ENSFCAG00000029191 | ||
Aliases: | None | ||
Description: | ribosomal protein S2 [Source:HGNC Symbol;Acc:10404] |
Percent Identity: | 66. % |
Parental protein coverage: | 66.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | FLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIV-PV |
FLGASLKD.VLK.M..QKQT.A.Q.TRF.AFVAI...NGH.GLGVKCS.EVATA.R.A...AKLS...PV | |
Retrocopy | FLGASLKDKVLKTMLAQKQTHADQCTRF*AFVAIKEDNGHIGLGVKCSREVATAVREAMVPAKLSSD<PV |
Parental | RRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMA-GIDDCYTSARGCTATL- |
.RG...NKI..PHTVPC.V..RC.SVLV.LI..PRGTG.VS.P.PKK...M....DDCYTSAR.C.AT.. | |
Retrocopy | WRGDSRNKIIRPHTVPCRVSSRCCSVLVGLILSPRGTGTVSVPEPKKIQTMT<STDDCYTSARDCPATR< |
Parental | GNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLV-KTHTRVSVQRTQAPAVAT |
GNF.KATFD..S.......P.LWK.TVF.KSPYQEFT.HLV.K.HTRVSV..TQAP.V.T | |
Retrocopy | GNFTKATFD--SQDLHLSLPHLWKDTVFIKSPYQEFTGHLV<KAHTRVSVKKTQAPLVFT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 283 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 608 .66 RPM |
SRP017611_liver | 0 .00 RPM | 446 .62 RPM |