RetrogeneDB ID: | retro_ttru_1416 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_112770:740766..741280(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GSTP1 | ||
Ensembl ID: | ENSTTRG00000003746 | ||
Aliases: | None | ||
Description: | glutathione S-transferase pi 1 [Source:HGNC Symbol;Acc:4638] |
Percent Identity: | 64.94 % |
Parental protein coverage: | 75.45 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MPPYTIVYFPVRGRCEAMRMLLADQDQSWKEEVVTMETWPS--LKASCLYGQLPKFQDGDLTLYQSNAIL |
..P.T.VYFPV.G...A...L.A.Q.QSWKEE.VT.ET.....LKAS.LYGQLPKFQ.GDLTLYQSNAIL | |
Retrocopy | LTPHTTVYFPVPGSAKATHVLRAGQGQSWKEEAVTKETQLQCPLKAS*LYGQLPKFQNGDLTLYQSNAIL |
Parental | RHLGRSLGLYGKDQREAALVDVVNDGVEDLRCKYVTLIYTNYEAGKDDYVKALPQHLKPFE-TLLSQSQG |
R.LG.SL.L.GKDQREAALVD..N..V..L.C.Y.TLIYTN.E.GK.D..KALP.HLKPFE..LLSQ.Q. | |
Retrocopy | RYLGCSLRLCGKDQREAALVDAGNYSVKALHCRYATLIYTNPEVGKEDDGKALPGHLKPFE<ALLSQHQR |
Parental | GQA-FIVGNQISFADYNLLDLLRIHQVLA-PGCL |
.....I.G.QISF..Y.LL..LR.HQVLA.P.CL | |
Retrocopy | SPT<YIMGKQISFTGYKLLHWLRTHQVLALPRCL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001020 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000011349 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000000879 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001519 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000004029 | 2 retrocopies | |
Mus musculus | ENSMUSG00000038155 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002230 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018237 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000003746 | 1 retrocopy |
retro_ttru_1416 ,
|
Tursiops truncatus | ENSTTRG00000009682 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000008003 | 1 retrocopy |