RetrogeneDB ID:

retro_ttru_1433

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_113069:40766..41372(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SET
Ensembl ID:ENSTTRG00000011605
Aliases:None
Description:SET nuclear oncogene [Source:HGNC Symbol;Acc:10760]


Retrocopy-Parental alignment summary:






>retro_ttru_1433
GAAGAGTTTGAAGTAGAACAGAAAAATAACAAACTCCGCCAATCCATTTTTTCAGAAGAGGTCAGAATTGACTGCCAAAA
TCTGAAATTTTGGTGTAACATTTGTCAACCATCCACAATTGTCTGTACTGTTTGTGCAGGAGGGTGAAGAGACACTGCAT
TATTTGATAAGAGTTGAAGTAACAGAATTTGAAAATATTAAATCAGGTTATAGAATAGATTTTTGTTTTAATGAAAACCC
TTACTTTGAAAATAAAGTTCTTTCCAAAGAACTTCATCTGAATGAGAGTGGTGATTCATCTTCAAAGTACACTGAAATCA
AATGGAAATCCAGAAAGGATCTGATGAAAAGTTCAAGCCAAACGCAGAATAAAGCCAGCAGGAAGACACAGCATGAGGAA
CCAGAGAGCTTCTTCACCTGGTTTCCTGATCATTCTGATGCAGCTTCAGATGAGTTAGGAGAGGTCATCAAAGATGACAT
TTGTCCAAATCCATTACAGTACTACTTGGTTCCTGACGTGGATGATGAGGAAGGGTAAGAAGAAGATGATGATGATGTTA
AGAAGAAGAAGGACTGGAAGATATTGATGAAGAAAGGAATGAGGAT

ORF - retro_ttru_1433 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.07 %
Parental protein coverage: 69.86 %
Number of stop codons detected: 2
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalEILKVEQKYNKLRQ-PFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEALHYLTRVEVTEFEDIKS
E...VEQK.NKLRQ.PFFQKRSEL.AKI.NF.VT.FVNHPQ.S.L...E.EE.LHYL.RVEVTEFE.IKS
RetrocopyEEFEVEQKNNKLRQ>PFFQKRSELTAKI*NFGVT-FVNHPQLSVLFVQEGEETLHYLIRVEVTEFENIKS
ParentalGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGKDLTKRSSQTQNKASRKRQHEEPESFF
GYRIDF.F.ENPYFENKVLSKE.HLNESGD.SSK.TEIKWKS.KDL.K.SSQTQNKASRK.QHEEPESFF
RetrocopyGYRIDFCFNENPYFENKVLSKELHLNESGDSSSKYTEIKWKSRKDLMKSSSQTQNKASRKTQHEEPESFF
ParentalTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDMDDEEGEGEEDDDDDE-EEEGLEDIDEEGDED
TWF.DHSDA..DELGEVIKDDI.PNPLQYYLVPD.DDEEG..EEDDDD...EEEGLEDIDEE..ED
RetrocopyTWFPDHSDAASDELGEVIKDDICPNPLQYYLVPDVDDEEG-*EEDDDDVK<EEEGLEDIDEERNED

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1433 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1433 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 136 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000156867 retrocopies
Bos taurus ENSBTAG000000209598 retrocopies
Canis familiaris ENSCAFG000000327282 retrocopies
Felis catus ENSFCAG000000058482 retrocopies
Microcebus murinus ENSMICG000000176432 retrocopies
Myotis lucifugus ENSMLUG0000001429113 retrocopies
Mustela putorius furoENSMPUG0000001306910 retrocopies
Mus musculus ENSMUSG0000005476617 retrocopies
Nomascus leucogenys ENSNLEG000000175952 retrocopies
Oryctolagus cuniculus ENSOCUG0000000750112 retrocopies
Otolemur garnettii ENSOGAG0000000763513 retrocopies
Pongo abelii ENSPPYG0000001965917 retrocopies
Pan troglodytes ENSPTRG0000002143616 retrocopies
Pteropus vampyrus ENSPVAG000000034372 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000105466 retrocopies
Tursiops truncatus ENSTTRG00000011605 7 retrocopies



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