RetrogeneDB ID: | retro_ttru_260 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_1722:395601..396115(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTTRG00000006164 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 76. % |
Parental protein coverage: | 86.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | APRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTG- |
AP..ST..HKLR.CL.LIIFLRNR.KYALTGDEVK.ICMQ.FIKIDGKV..DITY.A.FM.VIS.D.T.. | |
Retrocopy | APCSSTSLHKLRKCLLLIIFLRNRFKYALTGDEVK-ICMQQFIKIDGKVQNDITYSAEFMNVISVD*TE< |
Parental | ENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLET |
ENF.LIYDTKG..AVHRIT...AKYKLCKVRKI.V.TKGIPHLVTH.A.TI.YPD.LIKVN.TIQI.LE. | |
Retrocopy | ENFHLIYDTKGGLAVHRITLKKAKYKLCKVRKISVCTKGIPHLVTHNASTICYPDSLIKVNNTIQIGLES |
Parental | GK-ITDFIKFDTGNLCMVTGGANLGRIGVITNRER |
GK..T.F.KFDTG.LC.VT.GANLGR.G.ITNRER | |
Retrocopy | GK<TTNFFKFDTGTLCLVTRGANLGRTGMITNRER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000014601 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000005805 | 14 retrocopies | |
Cavia porcellus | ENSCPOG00000006337 | 3 retrocopies | |
Equus caballus | ENSECAG00000010852 | 6 retrocopies | |
Homo sapiens | ENSG00000129824 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000023079 | 18 retrocopies | |
Meleagris gallopavo | ENSMGAG00000009671 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000011070 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005294 | 11 retrocopies | |
Otolemur garnettii | ENSOGAG00000011808 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000022470 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000003201 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000006164 | 13 retrocopies |