RetrogeneDB ID: | retro_ggor_223 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:21188812..21189468(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000028513 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000198034 | ||
Ensembl ID: | ENSGGOG00000023079 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.23 % |
Parental protein coverage: | 78.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | AAPKHWMLDKLTGVFAPRPSTGPHKLRECLPHI-FLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITY |
...K.WML..LTGV.AP.PST.PHKLR..LP.I.FLRNR.KYAL..DE.K.I.M.R.IKID.KV.TD.TY | |
Retrocopy | SSSKQWMLETLTGVSAPHPSTSPHKLRMHLPLI>FLRNRIKYALIRDELK-IWMLRLIKIDDKVQTDRTY |
Parental | PAGFMDVISIDKTGENFRLIYDTK-GRFAVHRITPEEAKYKLCKVRKIF-VGTKGIPHLVTHDARTIRYP |
PAGF..VI.IDKT.EN..LI.....G.FA.HRIT.EEAKYKLCKVRKI....TKGIPHLVT.DA.TIRYP | |
Retrocopy | PAGFKGVIIIDKTRENVCLICNIR<GHFAIHRITAEEAKYKLCKVRKIL<AATKGIPHLVTDDAGTIRYP |
Parental | DPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFAT |
.PLIKVND.IQIDL.TGK.TD.IKFDTGNL.MVTGGANLGRIGVITNRERHPGSFDVVHVKDAN.NSFAT | |
Retrocopy | GPLIKVNDIIQIDLDTGKSTDVIKFDTGNLWMVTGGANLGRIGVITNRERHPGSFDVVHVKDANSNSFAT |
Parental | RLSNIFVIGKGNK |
.LS.IFVIGKGNK | |
Retrocopy | WLSSIFVIGKGNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 180 .31 RPM |
SRP007412_cerebellum | 0 .16 RPM | 166 .34 RPM |
SRP007412_heart | 0 .03 RPM | 106 .88 RPM |
SRP007412_kidney | 0 .00 RPM | 528 .04 RPM |
SRP007412_liver | 0 .03 RPM | 355 .23 RPM |
SRP007412_testis | 0 .21 RPM | 194 .66 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_120 |
Pan troglodytes | retro_ptro_131 |
Pongo abelii | retro_pabe_493 |