RetrogeneDB ID: | retro_ggor_2676 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 8:93250984..93251667(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000198034 | ||
Ensembl ID: | ENSGGOG00000023079 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.57 % |
Parental protein coverage: | 81.72 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | GPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQRFIKID |
GPKKHLK..AAPKHWMLD.LT..FAP..STGP.KLR...PH.IFLRN.LKY.LTGDE.KKICMQRFIKI. | |
Retrocopy | GPKKHLK*AAAPKHWMLDELTSMFAPCTSTGPYKLRVS-PH>IFLRN*LKYTLTGDEEKKICMQRFIKIN |
Parental | GKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHD |
GKV.TDITYPAGFM.VISIDKT.E.F.LIYDTKG.FAVH.ITP.E.KYKLCKVRK.FV.TKGIPHLVTHD | |
Retrocopy | GKV*TDITYPAGFMNVISIDKTREHFHLIYDTKGHFAVHPITPQETKYKLCKVRKTFVSTKGIPHLVTHD |
Parental | ARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRE-RHPGSFDVVHVKD |
A.T..YPD.LIKVND.I..DL.TGKITDF.KFDTG...MVTGGANL...GVITNRE.RH.GSFDVVHVKD | |
Retrocopy | AFTVCYPDSLIKVNDPI*TDL*TGKITDFLKFDTGSIRMVTGGANLRQTGVITNRE>RHLGSFDVVHVKD |
Parental | ANGNSFATRLSNIFVIGKGN |
ANGNSF.TRLSNIF.IGKG. | |
Retrocopy | ANGNSFITRLSNIFDIGKGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 180 .31 RPM |
SRP007412_cerebellum | 0 .08 RPM | 166 .34 RPM |
SRP007412_heart | 0 .00 RPM | 106 .88 RPM |
SRP007412_kidney | 0 .04 RPM | 528 .04 RPM |
SRP007412_liver | 0 .00 RPM | 355 .23 RPM |
SRP007412_testis | 0 .10 RPM | 194 .66 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3986 |
Pongo abelii | retro_pabe_3275 |