RetrogeneDB ID:

retro_ttru_614

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_2910:49256..49569(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ERH
Ensembl ID:ENSTTRG00000013963
Aliases:None
Description:enhancer of rudimentary homolog (Drosophila) [Source:HGNC Symbol;Acc:3447]


Retrocopy-Parental alignment summary:






>retro_ttru_614
ATGTCTCACACCATTTTGCTGGTAACAGCCTACCCAGAGGCCAGAAGGCAGAACTTATGCTGACTATGAATCTGTAAATG
AATGCATGGAAGGTGTTTGTAAAATGTATGAAGAACATCTGAAGAGAATGAATCCCAACAGCCCCTCTATCACATATGAT
ATCAGTCAGTTGTTTGATTCTGTTGATGACCTGGCAGACCTCAACTGCCTTGTTTACTGAGCTGATACCCAGACAAACCA
GCCTTATAACAAAGACTGGATTAAAGAGAAGATCCAGGTGCTCCTTTGTCGACAGGCACAACAGGCAAGGAAA

ORF - retro_ttru_614 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.48 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMSHTILLV-QPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSC
MSHTILLV.QPT.RPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFD..DDLADL.C
RetrocopyMSHTILLV>QPTQRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDSVDDLADLNC
ParentalLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQQAGK
LVY.ADTQT.QPYNKDWIKEKI.VLL.RQAQQA.K
RetrocopyLVY*ADTQTNQPYNKDWIKEKIQVLLCRQAQQARK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_614 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_614 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 29 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000177984 retrocopies
Callithrix jacchus ENSCJAG000000149402 retrocopies
Equus caballus ENSECAG000000191781 retrocopy
Erinaceus europaeus ENSEEUG000000077586 retrocopies
Echinops telfairi ENSETEG000000161725 retrocopies
Homo sapiens ENSG000001006322 retrocopies
Myotis lucifugus ENSMLUG000000118791 retrocopy
Oryctolagus cuniculus ENSOCUG000000046361 retrocopy
Ochotona princeps ENSOPRG000000000862 retrocopies
Pongo abelii ENSPPYG000000059392 retrocopies
Tursiops truncatus ENSTTRG00000013963 2 retrocopies
retro_ttru_1671, retro_ttru_614 ,
Vicugna pacos ENSVPAG000000064441 retrocopy



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