RetrogeneDB ID: | retro_eeur_105 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_6471:161623..161929(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ERH | ||
Ensembl ID: | ENSEEUG00000007758 | ||
Aliases: | None | ||
Description: | enhancer of rudimentary homolog (Drosophila) [Source:HGNC Symbol;Acc:3447] |
Percent Identity: | 86.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCL |
.SHTILLVQ....P.G...ADYESVNECMEGVCKMYEEHLKRMNP.SPSITYDISQLFDFIDDLADLSCL | |
Retrocopy | VSHTILLVQ---LPRGHKAADYESVNECMEGVCKMYEEHLKRMNPSSPSITYDISQLFDFIDDLADLSCL |
Parental | VYRADTQTYQPYNKDWIKEKIYVLL-RRQAQQAGK |
VYRA.TQTYQPYNKDWIKEKI..LL.RRQAQQAGK | |
Retrocopy | VYRAETQTYQPYNKDWIKEKICMLLGRRQAQQAGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .32 RPM | 29 .81 RPM |
SRP017611_kidney | 0 .38 RPM | 29 .26 RPM |
SRP017611_liver | 0 .80 RPM | 12 .70 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017798 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000014940 | 2 retrocopies | |
Equus caballus | ENSECAG00000019178 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000007758 | 6 retrocopies | |
Echinops telfairi | ENSETEG00000016172 | 5 retrocopies | |
Homo sapiens | ENSG00000100632 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000011879 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000004636 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000000086 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000005939 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000002307 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000013963 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000006444 | 1 retrocopy |